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  1. IGB
  2. IGBF-3555

Add Ensembl REST API to IGB

        Details

        • Type: Epic
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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        • Epic Name:
          Add Ensembl REST API to IGB

          Description

          Situation: Similar to the UCSC REST API (see IGBF-3129) that provides access to genomes and their annotations, Ensembl appears to also have an API that we may be able to access in order to add additional genomes and annotations to IGB.

          Task: Investigate and if possible implement a new module for consuming data from Ensembl API.

          https://rest.ensembl.org/

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              is blocked by

              Task - A task that needs to be done. IGBF-3905 Change the implementation logic to disable the dataprovider when defaultDataProviderId is changed

              • Major - Major loss of function.
              • In Progress
              relates to

              Task - A task that needs to be done. IGBF-3593 Investigate pytozome/JGI API

              • Major - Major loss of function.
              • To-Do

              Epic - Created by JIRA Software - do not edit or delete. Issue type for a big user story that needs to be broken down. IGBF-3129 Enable IGB to directly consume data from UCSC JSON API

              • Major - Major loss of function.
              • Closed

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                  People

                  • Assignee:
                    jsirigin Jaya Sravani Sirigineedi
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated: