Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Blocker
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 3
Description
Situation: There is a bug where the App Manager will crash after clicking on the various apps.
Task: Investigate the issue.
To reproduce the issue:
- Install IGB 10.0.0
- Note - I cannot reproduce this issue when running IGB locally through a terminal. The crash only seems to occur with the installed version of IGB 10.0.0.
- Select the Plug-ins tab.
- Select Launch App Manager
- Select an app, then select another app, repeat this until IGB crashes, usually around 20 clicks.
Attachments
Issue Links
- relates to
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- Closed
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Activity
Update:
- Using EC2 in the same directory as a newly edited Dockerfile to rebuild image with:
docker build -t igb-maven-install4j:I4J10-jre-21.0.2 .
- Cloning IGB onto EC2 with:
git clone --single-branch --branch main-JDK21-with-javafx-no-theme https://aloraine@bitbucket.org/lorainelab/integrated-genome-browser.git build
- edited install4Jv10 configuration file to use jre bundles for 21.0.2:
<mediaSets>
<windows name="Windows_x86_64" id="23" architecture="64">
<jreBundle jreBundleSource="preCreated" includedJre="windows-amd64-21.0.2" />
</windows>
<unixInstaller name="Unix Installer" id="25">
<jreBundle jreBundleSource="preCreated" includedJre="linux-amd64-21.0.2" />
</unixInstaller>
<macosFolder name="Mac_OS X_universal" id="552" architecture="universal" signLaunchers="true">
<jreBundle jreBundleSource="preCreated" includedJre="macos-universal-21.0.2" />
</macosFolder>
</mediaSets>
- deployed low-risk certificates for signing jars to distribution directory inside build directory made in the previous step
- Started interactive docker session running the new image with:
docker run -i -t -v ~/build:/build --env-file env_vars --workdir /build igb-maven-install4j:I4J10-jre-21.0.2 /bin/bash
- within the interactive session above, tested docker image's ability to build installers with:
mvn install -P release-bitbucket-pipelines
The above command completed without reporting an error.
Checked image - it has the expected jres in ~/.local.
Tagged (made an alias) for new image with:
docker tag 96396a8f0274 lorainelab/igb-maven-install4j:I4J10-jre-21.0.2
After logging into docker hub with:
docker login -u aloraine
pushed the image to docker hub with:
docker push lorainelab/igb-maven-install4j:I4J10-jre-21.0.2
Update:
- Made new branch (named for this ticket) with edit to bitbucket pipelines configuration file and pushed to a fork.
- Ran "installer for dev" branch pipeline without error.
- Ran "release" branch pipeline without error.
- Downloaded Mac installer and ran it. IGB started without error on my Big Sur system, which couldn't run IGB made with JRE 21.0.1
- Decided to take a chance and merge the code into main dev branch on team repository without review.
Created and merged PR. Installers are available for download and testing in https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/ as
- IGB-macos-universal-main-JDK21-with-javafx-no-theme.dmg
- IGB-windows-amd64-main-JDK21-with-javafx-no-theme.dmg
- IGB-linux-amd64-main-JDK21-with-javafx-no-theme.sh
Pushed updated main-JDK21-with-javafx-no-theme to my fork, bitbucket pipeline ran successfully. Downloaded installer for Mac (running intel macOS 13.6.4) and did not observe the app manager crashing.
Closing ticket.
I created an installer locally using JRE version 21.0.0 with Install4Jv10 and was able to replicate the behavior on my Mac.
I then created an installer locally using JRE version 21.0.1 with Install4Jv10 and was not able to replicate the behavior on my Mac.
Looking at the attached error log (hs_err_pid16613.log) I see webkit mentioned several times. This is interesting as the reason we went down to JRE 21.0.0 was because older versions of MacOS were crashing due to a webkit issue on JRE 21.0.1.
A new JRE has now been released 21.0.2. It may be worth testing to see if JRE 21.0.2 will work on the older MacOS versions.