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  1. IGB
  2. IGBF-3601

Investigate microbe genome availability from UCSC

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2

          Description

          Situation: UCSC (http://microbes.ucsc.edu/cgi-bin/hgGateway) does have many microbial genomes available. However, they do not appear to be available through the REST API (https://api.genome.ucsc.edu/list/ucscGenomes). It would be beneficial to our users if we could add these genomes as well.

          Task: Determine if the microbial genomes available through http://microbes.ucsc.edu/cgi-bin/hgGateway can be accessed via an API.

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              relates to

              Epic - Created by JIRA Software - do not edit or delete. Issue type for a big user story that needs to be broken down. IGBF-3129 Enable IGB to directly consume data from UCSC JSON API

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    Unassigned
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated: