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  1. IGB
  2. IGBF-3658

Implement logic to load data for bigGenePred file type

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: 10.1.0
    • Labels:
      None

      Description

      Develop code to connect to this https://api.genome.ucsc.edu/getData/track?genome=hg38&track=knownGene&chrom=chr1&start=1&end=2480000 API and load Data for the bigGenePred file type.
      Investigate whether this file format can be parsed as genePred, if this can't be done we have to parse this using Bed parser and add logic to parse the bigGenePred file format.

        Attachments

        1. knownGene.bed.gz
          1 kB
          Nowlan Freese
        2. Screenshot 2024-03-27 at 1.46.16 PM.png
          197 kB
          Jaya Sravani Sirigineedi
        3. Screenshot 2024-03-27 at 3.53.28 PM.png
          237 kB
          Nowlan Freese

          Activity

            People

            • Assignee:
              jsirigin Jaya Sravani Sirigineedi (Inactive)
              Reporter:
              jsirigin Jaya Sravani Sirigineedi (Inactive)
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              Dates

              • Created:
                Updated:
                Resolved: