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  1. IGB
  2. IGBF-3658

Implement logic to load data for bigGenePred file type

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: 10.1.0
    • Labels:
      None

      Description

      Develop code to connect to this https://api.genome.ucsc.edu/getData/track?genome=hg38&track=knownGene&chrom=chr1&start=1&end=2480000 API and load Data for the bigGenePred file type.
      Investigate whether this file format can be parsed as genePred, if this can't be done we have to parse this using Bed parser and add logic to parse the bigGenePred file format.

        Attachments

          Activity

          jsirigin Jaya Sravani Sirigineedi (Inactive) created issue -
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Field Original Value New Value
          Epic Link IGBF-3129 [ 21675 ]
          nfreese Nowlan Freese made changes -
          Sprint Spring 6 [ 190 ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Assignee Jaya Sravani Sirigineedi [ jsirigin ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ]
          nfreese Nowlan Freese made changes -
          nfreese Nowlan Freese made changes -
          Attachment knownGene.bed.gz [ 18305 ]
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ] Jaya Sravani Sirigineedi [ jsirigin ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Assignee Jaya Sravani Sirigineedi [ jsirigin ]
          ann.loraine Ann Loraine made changes -
          Sprint Spring 6 [ 190 ] Spring 6, Spring 7 [ 190, 191 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ]
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ] Jaya Sravani Sirigineedi [ jsirigin ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          jsirigin Jaya Sravani Sirigineedi (Inactive) made changes -
          Assignee Jaya Sravani Sirigineedi [ jsirigin ]
          nfreese Nowlan Freese made changes -
          Assignee Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          ann.loraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          nfreese Nowlan Freese made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          nfreese Nowlan Freese made changes -
          Assignee Jaya Sravani Sirigineedi [ jsirigin ]
          nfreese Nowlan Freese made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
          nfreese Nowlan Freese made changes -
          Fix Version/s 10.1.0 [ 11000 ]

            People

            • Assignee:
              jsirigin Jaya Sravani Sirigineedi (Inactive)
              Reporter:
              jsirigin Jaya Sravani Sirigineedi (Inactive)
            • Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: