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  1. IGB
  2. IGBF-3670

Fix IGB unable to load files/folders with spaces

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: A user reported an issue loading a local file in IGB 10.0.0. The issue appears to be that there was an illegal character, a space, in the name of a folder on the path to the file. The issue was not present in IGB 9.1.10. Therefore, the issue may be due to our upgrade in either the htsjdk or in Java.

          The two filetypes affected appear to be bigwig and bigbed. Example files can be found here: https://data.bioviz.org/smokeTestingQuickload/H_sapiens_Dec_2013/

          Task: Allow IGB to load bigwig and bigbed files from local paths that contain spaces.

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1471 Fix bigwig parsing code in 9.0.2

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3702 User Report: Issue loading bigWig file

              • Critical - Crashes, loss of data, severe memory leak.
              • Closed

              Task - A task that needs to be done. IGBF-3707 Ensure we can still build installers for IGB 9 versions

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3716 Create patch fix for IGB 10.0.1

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3671 Update HTSJDK to newest version

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3490 Import HTSJDK 3.0.5 as OSGI bundle

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated:
                      Resolved: