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  1. IGB
  2. IGBF-3671

Update HTSJDK to newest version

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: 10.1.0
        • Labels:
          None

          Description

          Task: Update the HTSJDK to the most recent version (see https://github.com/samtools/htsjdk/releases). Currently the Loraine Lab has its own version of the HTSJDK. As part of this ticket, investigate whether we can switch to using the official HTSJDK.

          Note that HTSJDK versions greater than 4 are officially compatible with JDK 17. IGB uses JDK 21 so we may encounter some issues upgrading.

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3670 Fix IGB unable to load files/folders with spaces

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3484 Update htsjdk-igb to 3.0.0

              • Major - Major loss of function.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    kgopu Kaushik Gopu
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated:
                      Resolved: