Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 7
Description
GOAL: Because the ARE 120 minute submission got suppressed by the NCBI, we are making a new submission with this dataset.
Why did it get suppressed? When I combined this dataset with Marks, it was under the same Bioproject umbrella. Later, when I split the 2, they simply repressed this dataset, taking away the Bioproject.
Information for submission is the same except now we are using the 1 letter code for IDs like we do in the other projects.
A summary of the data can be found here, along with a new column depicting those codes.
https://docs.google.com/spreadsheets/d/1LF-FaWDGAILx3mcSLBOcCzRopoqvD3kC/edit?usp=sharing&ouid=100714234126361751017&rtpof=true&sd=true
V=VF36
A=are
F=OX3
G=OX4
1 Letter Code
V.28.120.1
A.28.120.1
F.28.120.1
G.28.120.1
V.34.120.1
A.34.120.1
F.34.120.1
G.34.120.1
V.28.120.2
A.28.120.2
F.28.120.2
G.28.120.2
V.34.120.2
A.34.120.2
F.34.120.2
G.34.120.2
V.28.120.3
A.28.120.3
F.28.120.3
G.28.120.3
V.34.120.3
A.34.120.3
F.34.120.3
G.34.120.3
Attachments
Issue Links
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- Closed
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Activity
Got a response. The submission is being pushed forward. Data is being moved from cold storage on their end.
SRA complete !!
This is an automatic acknowledgment that your recent submission to the SRA database has been successfully processed and will be released on the date specified.
Please reference PRJNA1096260 in your publication. This BioProject accession number is provided instead of SRP and should be used in your publication as it will allow better searching in Entrez.
Accession to cite for these SRA data: PRJNA1096260
Temporary Submission ID: SUB14356512
Release date: 2024-04-06
Your SRA records will be accessible with the following link after the indicated release date:
https://www.ncbi.nlm.nih.gov/sra/PRJNA1096260
Send questions and update requests to sra@ncbi.nlm.nih.gov; include the citation accession PRJNA1096260 in any correspondence.
Regards,
NCBI SRA Submissions Staff
Bethesda, Maryland USA
To review:
Take a peak at the SRA above and check out the 24 samples for logical completeness.
In the first comment above there is the SRA excel sheet. It would be good to compare this sheet to the SRA samples posted in the comment above.
Review:
I took the SRA meta data excel sheet Dr. Reid made and compared it to the SRA Runinfo.csv file from NCBI and compared both. It seems all of the sample names match their library names.The runs also seem correct on NCBI. I would say this submission was successful and it fixed the problem with combining experiments onto the same bio project. To confirm, the next step would be to pull the data from SRA and run it through the nextflow pipeline then compare the original data to the SRA submission data. Moving this ticket to testing for Dr. Reid to close if ready and then I will create the next step tickets!
SRP499796
All done.
FTP almost completed 46/48 files are uploaded.
That is final step in submission.
Upon submission, data could be ready within hours.
I did an SRA submission Tuesday for a starfish and the data was available the next day.