Compare original ARE 120 minute flavonoid data to SRA Re-run data

The new SRA meta-data is correct so far as we can tell. Moving to Done.

Proceeding to test by re-running checking code.

Above PR is merged.

Updated Branch with output file line added:

https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/commits/24714cd3053b54e5749b2fbc1ce02c16bcb53db8

Branch: https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/branch/IGBF-3693b

Note: Moved the files to a new documentation folder. The SRA mutliQC reports were already created and added to the repo prior to adding the original data one from the cluster.

Change requests:

• Move excel and html MultiQC report files to a new directory "Documentation"
• Where is the "multiQC report for the newly run "SRR" samples? We need two multi-qc reports: one showing how the pipeline ran on the original sequence files and one showing how the pipeline ran on the newly downloaded samples

Branch: https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/branch/IGBF-3693

Update: I found the original data on the cluster but only SL4 was run so for the comparison it will be made with the SRA SL4 run for right now. I am currently creating sample sheets for the original data and the rerun SRA data.