Compare original ARE 120 minute flavonoid data to SRA Re-run data

Update: I found the original data on the cluster but only SL4 was run so for the comparison it will be made with the SRA SL4 run for right now. I am currently creating sample sheets for the original data and the rerun SRA data.

Branch: https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/branch/IGBF-3693

Change requests:

• Move excel and html MultiQC report files to a new directory "Documentation"
• Where is the "multiQC report for the newly run "SRR" samples? We need two multi-qc reports: one showing how the pipeline ran on the original sequence files and one showing how the pipeline ran on the newly downloaded samples

Branch: https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/branch/IGBF-3693b

Note: Moved the files to a new documentation folder. The SRA mutliQC reports were already created and added to the repo prior to adding the original data one from the cluster.

Updated Branch with output file line added:

https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/commits/24714cd3053b54e5749b2fbc1ce02c16bcb53db8

Above PR is merged.

Proceeding to test by re-running checking code.

The new SRA meta-data is correct so far as we can tell. Moving to Done.