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  1. IGB
  2. IGBF-3705

Add USEQ support back to IGB

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: 10.1.0
        • Labels:
          None

          Description

          Situation: A user has reported that they are unable to load USEQ files in IGB in 10.0.0. We removed USEQ support in IGB 9.1.10 (IGBF-3146).

          Task: Add USEQ support back to IGB. It was removed in this pull request.

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              relates to

              Task - A task that needs to be done. IGBF-3146 Remove "useq" packages from genometry bundle in IGB

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese added a comment -

                Tested using early-access installer on Mac.

                I was able to load and then remove data from the three test files in IGB successfully with no errors/warnings in the log.

                I have also messaged the IGB user through the IGB help desk to let them know about USEQ support in IGB Early Access.

                Closing ticket.

                Show
                nfreese Nowlan Freese added a comment - Tested using early-access installer on Mac. I was able to load and then remove data from the three test files in IGB successfully with no errors/warnings in the log. I have also messaged the IGB user through the IGB help desk to let them know about USEQ support in IGB Early Access. Closing ticket.
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                nfreese Nowlan Freese added a comment -

                Ann Loraine - Yes that is a good idea, I will reach out to them and let them know once it is tested. It would be great if they could try it out as they seem to be very familiar with useq.

                Show
                nfreese Nowlan Freese added a comment - Ann Loraine - Yes that is a good idea, I will reach out to them and let them know once it is tested. It would be great if they could try it out as they seem to be very familiar with useq.
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                ann.loraine Ann Loraine added a comment - - edited

                PR is merged. Installers are built and deployed to the "early access" section of bioviz.org web site.

                Question for the team: After testing, could we let the user know about the updated IGB version?

                Paige Kulzer, Nowlan Freese, Jaya Sravani Sirigineedi

                Show
                ann.loraine Ann Loraine added a comment - - edited PR is merged. Installers are built and deployed to the "early access" section of bioviz.org web site. Question for the team: After testing, could we let the user know about the updated IGB version? Paige Kulzer , Nowlan Freese , Jaya Sravani Sirigineedi
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                jsirigin Jaya Sravani Sirigineedi added a comment -

                Raised a Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1019. Please review and let me know if there are any issues.

                Show
                jsirigin Jaya Sravani Sirigineedi added a comment - Raised a Pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1019 . Please review and let me know if there are any issues.
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                nfreese Nowlan Freese added a comment -

                Tested on updated branch, issue is fixed, ready for pull request.

                Show
                nfreese Nowlan Freese added a comment - Tested on updated branch, issue is fixed, ready for pull request.
                6 older comments

                  People

                  • Assignee:
                    jsirigin Jaya Sravani Sirigineedi
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated:
                      Resolved: