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  1. IGB
  2. IGBF-3705

Add USEQ support back to IGB

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: A user has reported that they are unable to load USEQ files in IGB in 10.0.0. We removed USEQ support in IGB 9.1.10 (IGBF-3146).

          Task: Add USEQ support back to IGB. It was removed in this pull request.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3146 Remove "useq" packages from genometry bundle in IGB

              • Major - Major loss of function.
              • Closed

                Activity

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                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3146 [ IGBF-3146 ]
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                nfreese Nowlan Freese added a comment -

                User conversation:

                I have updated to ver.10.0.0. But it could not apply .useq file and it shows "FORMAT NOT RECOGNIZED".
                I also tried to upload .useq file which could upload previously, but same error message displayed.
                I checked "Species" and "Genome version". What was wrong? Is there any suggestions?
                Thanks,
                Sachi

                Hi Sachi,

                USEQ support was removed in 2022 for IGB 9.1.10. I will look to see if we can add USEQ support back to IGB for the next release. In the meantime, I would suggest downloading IGB 9.1.8 from SourceForge and install it on your computer as it should be the most recent version of IGB to support USEQ: https://sourceforge.net/projects/genoviz/files/IGB%209.1.8/

                Sorry for the trouble!

                Nowlan

                Show
                nfreese Nowlan Freese added a comment - User conversation: I have updated to ver.10.0.0. But it could not apply .useq file and it shows "FORMAT NOT RECOGNIZED". I also tried to upload .useq file which could upload previously, but same error message displayed. I checked "Species" and "Genome version". What was wrong? Is there any suggestions? Thanks, Sachi Hi Sachi, USEQ support was removed in 2022 for IGB 9.1.10. I will look to see if we can add USEQ support back to IGB for the next release. In the meantime, I would suggest downloading IGB 9.1.8 from SourceForge and install it on your computer as it should be the most recent version of IGB to support USEQ: https://sourceforge.net/projects/genoviz/files/IGB%209.1.8/ Sorry for the trouble! Nowlan
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                ann.loraine Ann Loraine added a comment -

                I don't think it is practical to support USEQ. I do not know if it is worthwhile to add back this support.

                Show
                ann.loraine Ann Loraine added a comment - I don't think it is practical to support USEQ. I do not know if it is worthwhile to add back this support.

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Watchers:
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                    Dates

                    • Created:
                      Updated: