Details
-
Type:
Task
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Story Points:1
-
Epic Link:
-
Sprint:Spring 9
Description
Create an Excel sample sheet for SRP499796, the 120 minute ARE data.
The sample sheet should be suitable input for makeAnnotsXml.py script.
Suggestion:
Start with a the output of the SRA Run selector, since it contains the mapping between SRR run identifiers and sample names.
Reminder:
- To access the run selected, visit https://trace.ncbi.nlm.nih.gov/Traces/?view=study&acc=SRP499796
- Click the "runs" link section on the right of the page to open the Run selector page
Attachments
Issue Links
- relates to
-
-
- Closed
-
Activity
Sorry, it looks like my comment on a related ticket is redundant with this.
Change request:
- Make a new folder "Documentation" inside "ARE-120min-analysis" and put the excel spreadsheets inside there
Please submit PR when ready.
PR is merged. Moving to DONE.
Branch: https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/branch/IGBF-3710
Note: I had to make a sample sheet for the original ARE data as it wasn't created before so I will add that to the repo as well but only add the SRA submission spreadsheet to makeAnnotsXml.py script. Also once the spreadsheets are merged to the main repo then I will add the code to makeAnnotsXml.py script and create another commit because it it is another directory.