Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Spring 9
Description
Create an Excel sample sheet for SRP499796, the 120 minute ARE data.
The sample sheet should be suitable input for makeAnnotsXml.py script.
Suggestion:
Start with a the output of the SRA Run selector, since it contains the mapping between SRR run identifiers and sample names.
Reminder:
- To access the run selected, visit https://trace.ncbi.nlm.nih.gov/Traces/?view=study&acc=SRP499796
- Click the "runs" link section on the right of the page to open the Run selector page
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Description |
Create an Excel sample sheet for SRP499796, the 120 minute ARE data.
The sample sheet should be suitable input for makeAnnotsXml.py script. |
Create an Excel sample sheet for SRP499796, the 120 minute ARE data.
The sample sheet should be suitable input for makeAnnotsXml.py script. Suggestion: Start with a the output of the SRA Run selector, since it contains the mapping between SRR run identifiers and sample names. Reminder: * To access the run selected, visit https://trace.ncbi.nlm.nih.gov/Traces/?view=study&acc=SRP499796 * Click the "runs" link section on the right of the page to open the Run selector page |
| Assignee | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Rank | Ranked higher |
| Assignee | Molly Davis [ molly ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
Sorry, it looks like my comment on a related ticket is redundant with this.
Change request:
- Make a new folder "Documentation" inside "ARE-120min-analysis" and put the excel spreadsheets inside there
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Rank | Ranked higher |
Please submit PR when ready.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Assignee | Molly Davis [ molly ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
PR is merged. Moving to DONE.
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
Branch: https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/branch/IGBF-3710
Note: I had to make a sample sheet for the original ARE data as it wasn't created before so I will add that to the repo as well but only add the SRA submission spreadsheet to makeAnnotsXml.py script. Also once the spreadsheets are merged to the main repo then I will add the code to makeAnnotsXml.py script and create another commit because it it is another directory.