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  1. IGB
  2. IGBF-3748

Add individual genome CRAM file to IGB quickload via svn

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: We have identified a publicly available Nebula Genomics CRAM file (link). Nowlan has downloaded the file and created an index, and was able to view the file in IGB. We would like to make this file available to IGB users as an example of a consumer genomics CRAM file.

          Task: Upload and deploy the CRAM file (NB72462M.cram), CRAM index, VCF file, and VCF index and make them available through an IGB Quickload. Also deploy the IGBF-3841 via the annots.xml.

          Note: Data are from Personal Genome Project
          Link to metadata in PGP: https://my.pgp-hms.org/profile/huF7A4DE
          Link to PGP search page: https://my.pgp-hms.org/public_genetic_data

            Attachments

            1. annots.xml
              2 kB
            2. quickload_V2.zip
              9 kB
            3. quickload_v3.zip
              9 kB
            4. quickload.zip
              8 kB

              Issue Links

              is blocked by

              Epic - Created by JIRA Software - do not edit or delete. Issue type for a big user story that needs to be broken down. IGBF-3871 Release IGB 10.1.0

              • Major - Major loss of function.
              • To-Do
              relates to

              Task - A task that needs to be done. IGBF-3841 Deploy new NEBULA data for human genome sequencing / CRAM demo

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3846 Design and print a poster for ASHG 2024 (Paige's)

              • Major - Major loss of function.
              • Closed

                Activity

                No work has yet been logged on this issue.

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated: