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  1. IGB
  2. IGBF-3777

Implement logic to sort the UCSC tracks

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: 10.1.0
        • Labels:
          None

          Description

          Implement logic to sort the UCSC tracks based on the track name.

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              Activity

              Ascending order - Click to sort in descending order
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              jsirigin Jaya Sravani Sirigineedi added a comment - - edited

              Implemented logic to sort the UCSC tracks based on the track name, removed unnecessary dependencies and renamed few things to make the code more readable. Tested, working as expected. Updated code is present at: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777. Please review and let me know if there are any issues.
              To test:

              1. Download https://bitbucket.org/jaya-sravani/integrated-genome-browser/downloads/ installer or clone this branch to local https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777 and start the application.
              2. Select a particular genome.
              3. See whether UCSC (Rest) datasets are in sorted order
              Show
              jsirigin Jaya Sravani Sirigineedi added a comment - - edited Implemented logic to sort the UCSC tracks based on the track name, removed unnecessary dependencies and renamed few things to make the code more readable. Tested, working as expected. Updated code is present at: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777 . Please review and let me know if there are any issues. To test: Download https://bitbucket.org/jaya-sravani/integrated-genome-browser/downloads/ installer or clone this branch to local https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777 and start the application. Select a particular genome. See whether UCSC (Rest) datasets are in sorted order
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              nfreese Nowlan Freese added a comment -

              Tested on Mac using Sravani's branch.

              UCSC tracks are now sorted.

              There is a typo in UCSCRestApiDataProvider.java, look for "genomoe". May be worth fixing. Otherwise ready for pull request.

              Show
              nfreese Nowlan Freese added a comment - Tested on Mac using Sravani's branch. UCSC tracks are now sorted. There is a typo in UCSCRestApiDataProvider.java, look for "genomoe". May be worth fixing. Otherwise ready for pull request.
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              jsirigin Jaya Sravani Sirigineedi added a comment -

              Fixed the typo and raised a pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1020. Please review and let me know if there are any changes.

              Show
              jsirigin Jaya Sravani Sirigineedi added a comment - Fixed the typo and raised a pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1020 . Please review and let me know if there are any changes.
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              ann.loraine Ann Loraine added a comment - - edited

              PR is merged and new installers built and deployed to bioviz.org.
              Ready for testing.

              Show
              ann.loraine Ann Loraine added a comment - - edited PR is merged and new installers built and deployed to bioviz.org. Ready for testing.
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              nfreese Nowlan Freese added a comment -

              Tested with the main branch installer on Mac.

              UCSC REST folders and files are sorted.

              Closing ticket.

              Show
              nfreese Nowlan Freese added a comment - Tested with the main branch installer on Mac. UCSC REST folders and files are sorted. Closing ticket.

                People

                • Assignee:
                  jsirigin Jaya Sravani Sirigineedi
                  Reporter:
                  jsirigin Jaya Sravani Sirigineedi
                • Votes:
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                  Watchers:
                  3 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: