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  1. IGB
  2. IGBF-3777

Implement logic to sort the UCSC tracks

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: 10.1.0
    • Labels:
      None

      Description

      Implement logic to sort the UCSC tracks based on the track name.

        Attachments

          Activity

          jsirigin Jaya Sravani Sirigineedi created issue -
          jsirigin Jaya Sravani Sirigineedi made changes -
          Field Original Value New Value
          Epic Link IGBF-1765 [ 17855 ]
          jsirigin Jaya Sravani Sirigineedi made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          Hide
          jsirigin Jaya Sravani Sirigineedi added a comment - - edited

          Implemented logic to sort the UCSC tracks based on the track name, removed unnecessary dependencies and renamed few things to make the code more readable. Tested, working as expected. Updated code is present at: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777. Please review and let me know if there are any issues.
          To test:

          1. Download https://bitbucket.org/jaya-sravani/integrated-genome-browser/downloads/ installer or clone this branch to local https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777 and start the application.
          2. Select a particular genome.
          3. See whether UCSC (Rest) datasets are in sorted order
          Show
          jsirigin Jaya Sravani Sirigineedi added a comment - - edited Implemented logic to sort the UCSC tracks based on the track name, removed unnecessary dependencies and renamed few things to make the code more readable. Tested, working as expected. Updated code is present at: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777 . Please review and let me know if there are any issues. To test: Download https://bitbucket.org/jaya-sravani/integrated-genome-browser/downloads/ installer or clone this branch to local https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3777 and start the application. Select a particular genome. See whether UCSC (Rest) datasets are in sorted order
          jsirigin Jaya Sravani Sirigineedi made changes -
          jsirigin Jaya Sravani Sirigineedi made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          jsirigin Jaya Sravani Sirigineedi made changes -
          Assignee Jaya Sravani Sirigineedi [ jsirigin ]
          ann.loraine Ann Loraine made changes -
          Sprint Summer 2 [ 196 ] Summer 2, Summer 3 [ 196, 197 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          Hide
          nfreese Nowlan Freese added a comment -

          Tested on Mac using Sravani's branch.

          UCSC tracks are now sorted.

          There is a typo in UCSCRestApiDataProvider.java, look for "genomoe". May be worth fixing. Otherwise ready for pull request.

          Show
          nfreese Nowlan Freese added a comment - Tested on Mac using Sravani's branch. UCSC tracks are now sorted. There is a typo in UCSCRestApiDataProvider.java, look for "genomoe". May be worth fixing. Otherwise ready for pull request.
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ] Jaya Sravani Sirigineedi [ jsirigin ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
          Hide
          jsirigin Jaya Sravani Sirigineedi added a comment -

          Fixed the typo and raised a pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1020. Please review and let me know if there are any changes.

          Show
          jsirigin Jaya Sravani Sirigineedi added a comment - Fixed the typo and raised a pull request: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1020 . Please review and let me know if there are any changes.
          jsirigin Jaya Sravani Sirigineedi made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          jsirigin Jaya Sravani Sirigineedi made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          jsirigin Jaya Sravani Sirigineedi made changes -
          Assignee Jaya Sravani Sirigineedi [ jsirigin ] Nowlan Freese [ nfreese ]
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          nfreese Nowlan Freese made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          ann.loraine Ann Loraine made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          Hide
          ann.loraine Ann Loraine added a comment - - edited

          PR is merged and new installers built and deployed to bioviz.org.
          Ready for testing.

          Show
          ann.loraine Ann Loraine added a comment - - edited PR is merged and new installers built and deployed to bioviz.org. Ready for testing.
          ann.loraine Ann Loraine made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          ann.loraine Ann Loraine made changes -
          Assignee Ann Loraine [ aloraine ]
          ann.loraine Ann Loraine made changes -
          Sprint Summer 2, Summer 3 [ 196, 197 ] Summer 2, Summer 3, Summer 4 [ 196, 197, 198 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ]
          nfreese Nowlan Freese made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          Hide
          nfreese Nowlan Freese added a comment -

          Tested with the main branch installer on Mac.

          UCSC REST folders and files are sorted.

          Closing ticket.

          Show
          nfreese Nowlan Freese added a comment - Tested with the main branch installer on Mac. UCSC REST folders and files are sorted. Closing ticket.
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ] Jaya Sravani Sirigineedi [ jsirigin ]
          nfreese Nowlan Freese made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
          nfreese Nowlan Freese made changes -
          Fix Version/s 10.1.0 [ 11000 ]

            People

            • Assignee:
              jsirigin Jaya Sravani Sirigineedi
              Reporter:
              jsirigin Jaya Sravani Sirigineedi
            • Votes:
              0 Vote for this issue
              Watchers:
              3 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: