Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Sprint:Summer 3, Summer 4
Description
For this task, create RNA-Seq alignments files (BAM), junction files (bed.gz), and scaled coverage graphs (bedgraph.gz) for data set SRP484252, submitted to Sequence Read Archive by Goldstein Lab at UNC Chapel Hill in 2024.
All code will be saved to main branch in this repository - see: https://bitbucket.org/lorainelab/tardigrade/src/main/
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3778 [ 22997 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Summer 3 [ 197 ] | Summer 3, Summer 4 [ 197, 198 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Summary | Run pipeline on SRP484252 (2024 Goldstein Lab) | Run nf-core/rnaseq v 3.14 on SRP484252 (2024 Goldstein Lab) |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Description | For this task, create RNA-Seq alignments files (BAM), junction files (bed.gz), and scaled coverage graphs (bedgraph.gz) for data set SRP484252, submitted to Sequence Read Archive by Goldstein Lab at UNC Chapel Hill in 2024. |
For this task, create RNA-Seq alignments files (BAM), junction files (bed.gz), and scaled coverage graphs (bedgraph.gz) for data set SRP484252, submitted to Sequence Read Archive by Goldstein Lab at UNC Chapel Hill in 2024.
All code will be saved in this repository: https://bitbucket.org/lorainelab/tardigrade/src/main/ |
| Description |
For this task, create RNA-Seq alignments files (BAM), junction files (bed.gz), and scaled coverage graphs (bedgraph.gz) for data set SRP484252, submitted to Sequence Read Archive by Goldstein Lab at UNC Chapel Hill in 2024.
All code will be saved in this repository: https://bitbucket.org/lorainelab/tardigrade/src/main/ |
For this task, create RNA-Seq alignments files (BAM), junction files (bed.gz), and scaled coverage graphs (bedgraph.gz) for data set SRP484252, submitted to Sequence Read Archive by Goldstein Lab at UNC Chapel Hill in 2024.
All code will be saved to main branch in this repository - see: https://bitbucket.org/lorainelab/tardigrade/src/main/ |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Dylan Marrotte [ dmarrott ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Dylan Marrotte [ dmarrott ] |