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  1. IGB
  2. IGBF-3816

Create Spreadsheet of SRP Information for Tardigrade RNA-Seq Data Mastersheet

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Minor
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Task: Create a spreadsheet using the RNA-seq datasets including species, SRX, SRR, treatment, and link following format provided in Ticket IGBF-3685

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              Task - A task that needs to be done. IGBF-3685 Identify RNA-Seq data for Tardigrade

              • Major - Major loss of function.
              • Closed

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                dmarrott Dylan Marrotte (Inactive) added a comment - - edited

                Link to table in Google Drive: https://docs.google.com/spreadsheets/d/1n-Z573ExQh1RDEaczv-oKlgJEWR_41g9KxvN6QblmyY/edit?usp=sharing

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                dmarrott Dylan Marrotte (Inactive) added a comment - - edited Link to table in Google Drive: https://docs.google.com/spreadsheets/d/1n-Z573ExQh1RDEaczv-oKlgJEWR_41g9KxvN6QblmyY/edit?usp=sharing
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                pkulzer Paige Kulzer added a comment -

                Thanks for adding to this mastersheet, Dylan Marrotte!

                I found two sheets that need fixing:

                1. SRP098563: Please fix the Species column, then edit the treatment conditions such that the values are either "Desiccated", "Frozen", or "Hydrated".
                2. SRP484252: Please take another look at this sheet - I see different SRX and SRR numbers when I pull up this SRP# on NCBI.
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                pkulzer Paige Kulzer added a comment - Thanks for adding to this mastersheet, Dylan Marrotte ! I found two sheets that need fixing: SRP098563 : Please fix the Species column, then edit the treatment conditions such that the values are either "Desiccated", "Frozen", or "Hydrated". SRP484252 : Please take another look at this sheet - I see different SRX and SRR numbers when I pull up this SRP# on NCBI.
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                dmarrott Dylan Marrotte (Inactive) added a comment -

                Addressed the issues that needed to be fixed.

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                dmarrott Dylan Marrotte (Inactive) added a comment - Addressed the issues that needed to be fixed.
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                pkulzer Paige Kulzer added a comment - - edited

                It looks like everything has been fixed - we now have tabs containing SRP information for each study in the mastersheet. Moving this to Done.

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                pkulzer Paige Kulzer added a comment - - edited It looks like everything has been fixed - we now have tabs containing SRP information for each study in the mastersheet. Moving this to Done.

                  People

                  • Assignee:
                    dmarrott Dylan Marrotte (Inactive)
                    Reporter:
                    dmarrott Dylan Marrotte (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: