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  1. IGB
  2. IGBF-3816

Create Spreadsheet of SRP Information for Tardigrade RNA-Seq Data Mastersheet

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Minor
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Task: Create a spreadsheet using the RNA-seq datasets including species, SRX, SRR, treatment, and link following format provided in Ticket IGBF-3685

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              Task - A task that needs to be done. IGBF-3685 Identify RNA-Seq data for Tardigrade

              • Major - Major loss of function.
              • Closed

                Activity

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                dmarrott Dylan Marrotte (Inactive) created issue -
                dmarrott Dylan Marrotte (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-3778 [ 22997 ]
                dmarrott Dylan Marrotte (Inactive) made changes -
                Link This issue blocks IGBF-3685 [ IGBF-3685 ]
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                dmarrott Dylan Marrotte (Inactive) added a comment - - edited

                Link to table in Google Drive: https://docs.google.com/spreadsheets/d/1n-Z573ExQh1RDEaczv-oKlgJEWR_41g9KxvN6QblmyY/edit?usp=sharing

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                dmarrott Dylan Marrotte (Inactive) added a comment - - edited Link to table in Google Drive: https://docs.google.com/spreadsheets/d/1n-Z573ExQh1RDEaczv-oKlgJEWR_41g9KxvN6QblmyY/edit?usp=sharing
                nfreese Nowlan Freese made changes -
                Story Points 2
                Sprint Summer 4 [ 198 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 4 [ 198 ] Summer 4, Summer 5 [ 198, 199 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                dmarrott Dylan Marrotte (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                dmarrott Dylan Marrotte (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                dmarrott Dylan Marrotte (Inactive) made changes -
                Assignee Dylan Marrotte [ dmarrott ] Nowlan Freese [ nfreese ]
                dmarrott Dylan Marrotte (Inactive) made changes -
                Assignee Nowlan Freese [ nfreese ] Paige Kulzer [ pkulzer ]
                pkulzer Paige Kulzer made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
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                pkulzer Paige Kulzer added a comment -

                Thanks for adding to this mastersheet, Dylan Marrotte!

                I found two sheets that need fixing:

                1. SRP098563: Please fix the Species column, then edit the treatment conditions such that the values are either "Desiccated", "Frozen", or "Hydrated".
                2. SRP484252: Please take another look at this sheet - I see different SRX and SRR numbers when I pull up this SRP# on NCBI.
                Show
                pkulzer Paige Kulzer added a comment - Thanks for adding to this mastersheet, Dylan Marrotte ! I found two sheets that need fixing: SRP098563 : Please fix the Species column, then edit the treatment conditions such that the values are either "Desiccated", "Frozen", or "Hydrated". SRP484252 : Please take another look at this sheet - I see different SRX and SRR numbers when I pull up this SRP# on NCBI.
                pkulzer Paige Kulzer made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                pkulzer Paige Kulzer made changes -
                Assignee Paige Kulzer [ pkulzer ] Dylan Marrotte [ dmarrott ]
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                dmarrott Dylan Marrotte (Inactive) added a comment -

                Addressed the issues that needed to be fixed.

                Show
                dmarrott Dylan Marrotte (Inactive) added a comment - Addressed the issues that needed to be fixed.
                dmarrott Dylan Marrotte (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                dmarrott Dylan Marrotte (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                dmarrott Dylan Marrotte (Inactive) made changes -
                Assignee Dylan Marrotte [ dmarrott ] Paige Kulzer [ pkulzer ]
                pkulzer Paige Kulzer made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
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                pkulzer Paige Kulzer added a comment - - edited

                It looks like everything has been fixed - we now have tabs containing SRP information for each study in the mastersheet. Moving this to Done.

                Show
                pkulzer Paige Kulzer added a comment - - edited It looks like everything has been fixed - we now have tabs containing SRP information for each study in the mastersheet. Moving this to Done.
                pkulzer Paige Kulzer made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                pkulzer Paige Kulzer made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                pkulzer Paige Kulzer made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                pkulzer Paige Kulzer made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                pkulzer Paige Kulzer made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                pkulzer Paige Kulzer made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                pkulzer Paige Kulzer made changes -
                Assignee Paige Kulzer [ pkulzer ] Dylan Marrotte [ dmarrott ]

                  People

                  • Assignee:
                    dmarrott Dylan Marrotte (Inactive)
                    Reporter:
                    dmarrott Dylan Marrotte (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: