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  1. IGB
  2. IGBF-3880

Investigate samtools tags consistency across datasets from Cell Ranger

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    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
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      Description

      Single cell RNA seq data has samtools tags (see link below) and ultimately we want to filter reads in IGB using these tags especially CR or CB tags, which unique IDs for cells. But first we need to know if the tags are consistent across cellranger pipeline versions and a reliable filter. The datasets in IGBF-3864 should be good enough viewed and compared for samtools tags and confirm the consistency.
      https://samtools.github.io/hts-specs/SAMtags.pdf

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              • Assignee:
                Unassigned
                Reporter:
                karthik Karthik Raveendran
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