Details
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Type:
Task
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
Description
Situation: Samtools specifies several tags for SAM/BAM files which provide additional information. Karthik has added CR and CB tags to the Filter/Color By option in IGB as part of IGBF-3881.
Task: Investigate which additional Samtool tags may be worth adding to the Filter/Color By option in IGB. While it may be easy to add many/all tags, consider if they would be useful to the end user and how that might affect the user interface.
Note that there may be custom tags specific to certain tools.
Samtools tags documentation: https://samtools.github.io/hts-specs/SAMtags.pdf
Cell Ranger Samtools tag documentation: https://www.10xgenomics.com/support/software/cell-ranger/latest/analysis/outputs/cr-outputs-bam