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  1. IGB
  2. IGBF-3881

Add samtools filter by and color by options for CR and CB tags

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          For this ticket, explore the prospect of adding samtools tags to right-click filter function so that user can filter reads from the track based on samtools tags. For the purposes of this ticket, adding CR, cellular barcode sequence bases, as a filter option so that users can filter reads based on cell identifiers.

          Adding this filter may help in understanding the UMI count matrix and to make a plan to add features for single cell data.

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              is blocked by

              Task - A task that needs to be done. IGBF-3867 Create a release branch without Ensembl code in it

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3897 Investigate Illumina sc-RNA-Seq

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBF-3907 Investigate adding additional Samtools tags to Filter/Color By options in IGB

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBF-3880 Investigate samtools tags consistency across datasets from Cell Ranger

              • Major - Major loss of function.
              • Closed

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                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
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                    • Created:
                      Updated:
                      Resolved: