Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:2
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Epic Link:
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Sprint:Fall 6, Fall 7
Description
Situation: If a user attempts to re-run a InterProScan job through ProtAnnot an error is thrown in the logs (see below).
Task: Investigate and fix the issue.
Steps to reproduce: Follow the IGB ProtAnnot SmokeTesting instructions. The error should appear after the step: Run the InterProScan again by selecting Run InterProScan under the InterProScan tab.
Exception in thread "AWT-EventQueue-0" java.lang.IndexOutOfBoundsException: Index 0 out of bounds for length 0 at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:100) at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:106) at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:302) at java.base/java.util.Objects.checkIndex(Objects.java:385) at java.base/java.util.ArrayList.get(ArrayList.java:427) at org.lorainelab.igb.protannot.model.InterProScanTableModel.getValueAt(InterProScanTableModel.java:90) at java.desktop/javax.swing.JTable.getValueAt(JTable.java:2769)
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1908 [ 17998 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Attachment | log.txt [ 18556 ] |
| Attachment | log.txt [ 18557 ] |
| Attachment | log_.txt [ 18558 ] |
| Attachment | Error_Log (2).txt [ 18559 ] |
| Attachment | ViewLogs.txt [ 18562 ] | |
| Attachment | CopyToClipboard.txt [ 18563 ] |
| Sprint | Fall 6 [ 207 ] | Fall 6, Fall 7 [ 207, 208 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Udaya Chinta [ uchinta ] |
| Assignee | Paige Kulzer [ pkulzer ] |
| Attachment | target.zip [ 18584 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Paige Kulzer [ pkulzer ] | Udaya Chinta [ uchinta ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Udaya Chinta [ uchinta ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] | Ann Loraine [ aloraine ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Link | This issue relates to IGBF-4034 [ IGBF-4034 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Paige Kulzer [ pkulzer ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |