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  1. IGB
  2. IGBF-3949

Fix error when re-running InterProScan job through ProtAnnot

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Situation: If a user attempts to re-run a InterProScan job through ProtAnnot an error is thrown in the logs (see below).

          Task: Investigate and fix the issue.

          Steps to reproduce: Follow the IGB ProtAnnot SmokeTesting instructions. The error should appear after the step: Run the InterProScan again by selecting Run InterProScan under the InterProScan tab.

          Exception in thread "AWT-EventQueue-0" java.lang.IndexOutOfBoundsException: Index 0 out of bounds for length 0
	at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:100)
	at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:106)
	at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:302)
	at java.base/java.util.Objects.checkIndex(Objects.java:385)
	at java.base/java.util.ArrayList.get(ArrayList.java:427)
	at org.lorainelab.igb.protannot.model.InterProScanTableModel.getValueAt(InterProScanTableModel.java:90)
	at java.desktop/javax.swing.JTable.getValueAt(JTable.java:2769)

            Attachments

            1. CopyToClipboard.txt
              50 kB
            2. Error_Log (2).txt
              10 kB
            3. log_.txt
              10 kB
            4. log.txt
              8 kB
            5. log.txt
              8 kB
            6. target.zip
              670 kB
            7. ViewLogs.txt
              26 kB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3648 Investigate: ProtAnnot's InterProScan - IndexOutOfBounds Exception

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-4035 Release ProtAnnot 10.0.2 to IGB App Store

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    pkulzer Paige Kulzer (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
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                    Watchers:
                    4 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: