Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3949

Fix error when re-running InterProScan job through ProtAnnot

        Details

        • Type: Bug
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:

          Description

          Situation: If a user attempts to re-run a InterProScan job through ProtAnnot an error is thrown in the logs (see below).

          Task: Investigate and fix the issue.

          Steps to reproduce: Follow the IGB ProtAnnot SmokeTesting instructions. The error should appear after the step: Run the InterProScan again by selecting Run InterProScan under the InterProScan tab.

          Exception in thread "AWT-EventQueue-0" java.lang.IndexOutOfBoundsException: Index 0 out of bounds for length 0
	at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:100)
	at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:106)
	at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:302)
	at java.base/java.util.Objects.checkIndex(Objects.java:385)
	at java.base/java.util.ArrayList.get(ArrayList.java:427)
	at org.lorainelab.igb.protannot.model.InterProScanTableModel.getValueAt(InterProScanTableModel.java:90)
	at java.desktop/javax.swing.JTable.getValueAt(JTable.java:2769)

            Attachments

              Activity

                People

                • Assignee:
                  uchinta Udaya Chinta
                  Reporter:
                  nfreese Nowlan Freese
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  1 Start watching this issue

                  Dates

                  • Created:
                    Updated: