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  1. IGB
  2. IGBF-3979

"Right-click menus" - Update documentation

    Details

    • Type: Documentation
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Story: "Right-click menus" page in documentation needs updating
      Date: July 17, 2014

      Intro: We should update the "Right-click menu" page in documentation to reflect recent changes made to the context menus for the 8.2.0 release

      Story was documented for:
      *IGB Version: 8.2.0

      What parts need updating?:

      • Intro = ACCURATE
      • Right-clicking annotations = Change picture and text to reflect attached screenshot
      • Right-clicking alignments = Change picture and text to reflect attached screenshot
      • Track labels = ACCURATE
      • Annotation track right-click menu = Change picture and text to reflect attached screenshot
      • Short read (alignment) track right-click menu = Change picture and add text/links to reflect attached screenshot
      • Graph track right-click menu = Change picture and add text/links to reflect attached screenshot
        ADD * Loaded sequence right-click menu = Add section and attached screenshot and appropriate text/links

      Summary:
      After examining this page in the documentation it is clear that the majority of this page needs updating for the IGB 8.2.0 release.

        Attachments

          Activity

          mason Mason Meyer (Inactive) created issue -
          mason Mason Meyer (Inactive) made changes -
          Field Original Value New Value
          Epic Link IGBF-140 [ 14594 ]
          mason Mason Meyer (Inactive) made changes -
          Summary "Right-click menus" page in documentation needs updating "Right-click menus" page - Update documentation
          Hide
          mason Mason Meyer (Inactive) added a comment -

          The updated screenshots must be retaken to include some more changes that have been incorporated into the right-click menu after I took the screenshots.
          In the future I will just post a story about what needs to be updated and the reason and I will not take any screenshots until I am actually going through the updating process.

          Show
          mason Mason Meyer (Inactive) added a comment - The updated screenshots must be retaken to include some more changes that have been incorporated into the right-click menu after I took the screenshots. In the future I will just post a story about what needs to be updated and the reason and I will not take any screenshots until I am actually going through the updating process.
          mason Mason Meyer (Inactive) made changes -
          Summary "Right-click menus" page - Update documentation "Right-click menus" - Update documentation
          mason Mason Meyer (Inactive) made changes -
          Story Points 0.5
          dcnorris David Norris (Inactive) made changes -
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          Assignee David Norris [ dcnorris ] Mason Meyer [ mason ]
          mason Mason Meyer (Inactive) made changes -
          Status Open [ 1 ] In Progress [ 3 ]
          mason Mason Meyer (Inactive) made changes -
          Status In Progress [ 3 ] Needs Testing [ 10002 ]
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          Status Needs Testing [ 10002 ] Closed [ 6 ]
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          Status Closed [ 6 ] Needs Testing [ 10002 ]
          Anonymous made changes -
          Status Needs Testing [ 10002 ] Closed [ 6 ]
          Anonymous made changes -
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          mason Mason Meyer (Inactive) made changes -
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          Status Testing In Progress [ 10003 ] Open [ 1 ]
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          mason Mason Meyer (Inactive) added a comment -

          Check this page for complete accuracy and also mention the "clickable whitespace" at an appropriate point in the page.

          Show
          mason Mason Meyer (Inactive) added a comment - Check this page for complete accuracy and also mention the "clickable whitespace" at an appropriate point in the page.
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          dcnorris David Norris (Inactive) made changes -
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          mason Mason Meyer (Inactive) made changes -
          Status Open [ 1 ] Needs Testing [ 10002 ]
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          Sprint Backlog Grooming Meeting [ 35 ]
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          Project IGB [ 10840 ] Deep Backlog [ 11041 ]
          Key IGBF-121 DB-56
          Workflow Loraine Lab Workflow [ 14703 ] jira [ 16763 ]
          Status Needs Testing [ 10002 ] Open [ 1 ]
          Hide
          pkulzer Paige Kulzer added a comment - - edited

          This ticket is quite old at this point but seeing as we just released a new version of IGB this week (10.1.0) we may as well continue with updating this documentation because it is quite out-of-date.

          Here's what needs updating in each section:
          Right-clicking annotations

          • Update picture
          • Re-order list to reflect the order of the context menu

          Right-clicking alignments

          • Remove "Restore Read Sequence" line (see IGBF-520)

          Annotation track right-click menu

          • Add "Lock Track Height" description
          • Add "Show mismatched bases" description
          • Add "Shade base by quality" description
          • Add "Filter..." description
          • Remove "Set Range of Color by Score"
          • Add "Clear Data" description
          • Add "Delete Track" description
          • Update picture

          Short read (alignment) track right-click menu

          • Add "Show mismatched bases" description
          • Add "Shade base by quality" description
          • Add "Show as Paired" description
          • Add "Configure Soft-clip" description
          • Add "Track Operations" description and link to "Creating graph tracks from annotations tracks" documentation
          • Update picture

          Graph track right-click menu

          • Update picture
          Show
          pkulzer Paige Kulzer added a comment - - edited This ticket is quite old at this point but seeing as we just released a new version of IGB this week (10.1.0) we may as well continue with updating this documentation because it is quite out-of-date. Here's what needs updating in each section: Right-clicking annotations Update picture Re-order list to reflect the order of the context menu Right-clicking alignments Remove "Restore Read Sequence" line (see IGBF-520 ) Annotation track right-click menu Add "Lock Track Height" description Add "Show mismatched bases" description Add "Shade base by quality" description Add "Filter..." description Remove "Set Range of Color by Score" Add "Clear Data" description Add "Delete Track" description Update picture Short read (alignment) track right-click menu Add "Show mismatched bases" description Add "Shade base by quality" description Add "Show as Paired" description Add "Configure Soft-clip" description Add "Track Operations" description and link to "Creating graph tracks from annotations tracks" documentation Update picture Graph track right-click menu Update picture
          nfreese Nowlan Freese made changes -
          Project Deep Backlog [ 11041 ] IGB [ 10840 ]
          Key DB-56 IGBF-3979
          Workflow jira [ 16763 ] Revised Fall 2019 Workflow Update [ 28079 ]
          Status Open [ 1 ] In Progress [ 3 ]
          nfreese Nowlan Freese made changes -
          Sprint Fall 5 [ 206 ]
          nfreese Nowlan Freese made changes -
          Assignee Mason Meyer [ mason ] Paige Kulzer [ pkulzer ]
          pkulzer Paige Kulzer made changes -
          Epic Link IGBF-140 [ 14594 ] IGBF-2809 [ 19325 ]
          Hide
          pkulzer Paige Kulzer added a comment -

          All of the above changes have been made. For review, please take a thorough look through this documentation and let me know if I missed any context menu items or if any of the current descriptions need to be modified.

          Link: https://wiki.bioviz.org/confluence/display/igbman/Right-click+%28context%29+menus

          Show
          pkulzer Paige Kulzer added a comment - All of the above changes have been made. For review, please take a thorough look through this documentation and let me know if I missed any context menu items or if any of the current descriptions need to be modified. Link: https://wiki.bioviz.org/confluence/display/igbman/Right-click+%28context%29+menus
          pkulzer Paige Kulzer made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          pkulzer Paige Kulzer made changes -
          Assignee Paige Kulzer [ pkulzer ] Nowlan Freese [ nfreese ]
          ann.loraine Ann Loraine made changes -
          Sprint Fall 5 [ 206 ] Fall 5, Fall 6 [ 206, 207 ]
          ann.loraine Ann Loraine made changes -
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          nfreese Nowlan Freese added a comment -

          Updated documentation looks good.

          Closing ticket.

          Show
          nfreese Nowlan Freese added a comment - Updated documentation looks good. Closing ticket.
          nfreese Nowlan Freese made changes -
          Assignee Nowlan Freese [ nfreese ] Paige Kulzer [ pkulzer ]
          nfreese Nowlan Freese made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          nfreese Nowlan Freese made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          nfreese Nowlan Freese made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          nfreese Nowlan Freese made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          nfreese Nowlan Freese made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          nfreese Nowlan Freese made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          nfreese Nowlan Freese made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

            People

            • Assignee:
              pkulzer Paige Kulzer
              Reporter:
              mason Mason Meyer (Inactive)
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              Dates

              • Created:
                Updated:
                Resolved: