Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:1
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Epic Link:
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Sprint:Fall 6
Description
With the success of the FCS filters, we once again uploaded the samples up to the TSA.
The TSA rejected the submission due to the oroginal issue of having N's in the first 20 BP of the sample.
Since Brandon has a script to do remove these already, we will rerun that script on the FCS filtered samples.
And then resubmit
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Summary | Filterning N's from the NCS filtered sequwnces | Filtering N's from the NCS filtered sequences |
| Description |
With the success of the FCS filters, we once again uploaded the samples up to the TSA. The TSA rejected the submission due to the oroginal issue of having N's in the first 20 BP of the sample. Since Brandon has a script to do remove these already, we will rerun that script on the FCS filtered samples. And then resubmit |
With the success of the FCS filters, we once again uploaded the samples up to the TSA.
The TSA rejected the submission due to the oroginal issue of having N's in the first 20 BP of the sample. Since Brandon has a script to do remove these already, we will rerun that script on the FCS filtered samples. And then resubmit |
| Assignee | Brandon Bendickson [ bbendick ] | Robert Reid [ robertreid ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
The sequences are now filtered via the FCS tools.
They have had the N's removed via Brandon.
Resubmitted and accepted for further review.
Now we wait.........
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Made a new short script to remove leading and trailing Ns. results found in /projects/tomato_genome/fnb/dataprocessing/TSA-transcriptomeShotgunAssembly/kelsieData/FCS_tools/FCS_GX/tom_runs/fin_results
Should be ready for another submission