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  1. IGB
  2. IGBF-4042

De novo annotations of Kelsey genes that have no matches

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          GOAL:
          This is will be a larger task that will need smaller stories.
          To apply annotations to all genes that were created via RNA-Spades that happen to fail to align back to any genes in the SL5 reference genome.

          We have summarized the contigs already.
          Can be seen here:
          https://drive.google.com/drive/folders/1yCTqt8nW_UjcDp17Z0gk0SCjkF06qPmJ?usp=drive_link

          Taking all the genes with no matches, we will run them through Braker and Interproscan (new sub tasks).

          First here, we will isolate those genes for each variety.

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              robofjoy Robert Reid created issue -
              robofjoy Robert Reid made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              robofjoy Robert Reid made changes -
              Assignee Ann Loraine [ aloraine ] Robert Reid [ robertreid ]
              ann.loraine Ann Loraine made changes -
              Sprint Winter 1 [ 209 ] Winter 1, Spring 1 [ 209, 210 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              robofjoy Robert Reid made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              ann.loraine Ann Loraine made changes -
              Sprint Winter 1, Spring 1 [ 209, 210 ] Winter 1, Spring 1, Spring 2 [ 209, 210, 211 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
              ann.loraine Ann Loraine made changes -
              Sprint Winter 1, Spring 1, Spring 2 [ 209, 210, 211 ] Winter 1, Spring 1, Spring 2, Spring 3 [ 209, 210, 211, 212 ]
              ann.loraine Ann Loraine made changes -
              Rank Ranked higher
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              robofjoy Robert Reid added a comment -

              This will soon be closed and broken into smaller tasks.

              Transdecoder etc..... Unigene maybe.

              Show
              robofjoy Robert Reid added a comment - This will soon be closed and broken into smaller tasks. Transdecoder etc..... Unigene maybe.
              robofjoy Robert Reid made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              robofjoy Robert Reid made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
              robofjoy Robert Reid made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              robofjoy Robert Reid made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              robofjoy Robert Reid made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              robofjoy Robert Reid made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              robofjoy Robert Reid made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              robofjoy Robert Reid made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                People

                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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                  Dates

                  • Created:
                    Updated:
                    Resolved: