Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Winter 1, Spring 1, Spring 2, Spring 3
Description
GOAL:
This is will be a larger task that will need smaller stories.
To apply annotations to all genes that were created via RNA-Spades that happen to fail to align back to any genes in the SL5 reference genome.
We have summarized the contigs already.
Can be seen here:
https://drive.google.com/drive/folders/1yCTqt8nW_UjcDp17Z0gk0SCjkF06qPmJ?usp=drive_link
Taking all the genes with no matches, we will run them through Braker and Interproscan (new sub tasks).
First here, we will isolate those genes for each variety.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Assignee | Ann Loraine [ aloraine ] | Robert Reid [ robertreid ] |
| Sprint | Winter 1 [ 209 ] | Winter 1, Spring 1 [ 209, 210 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Winter 1, Spring 1 [ 209, 210 ] | Winter 1, Spring 1, Spring 2 [ 209, 210, 211 ] |
| Rank | Ranked higher |
| Sprint | Winter 1, Spring 1, Spring 2 [ 209, 210, 211 ] | Winter 1, Spring 1, Spring 2, Spring 3 [ 209, 210, 211, 212 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |