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  1. IGB
  2. IGBF-4118

Change Samtools Tags to SAMtags

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Minor
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Samtools Tags may be a mouthful for the user. Change the name to SAMtags so that users and future developers can easily refer to the features.

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              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3942 Add the ability to add multiple values for Color by

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-4100 Add Delete button functionality in Color by Samtools tags table

              • Major - Major loss of function.
              • Closed

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                karthik Karthik Raveendran created issue -
                karthik Karthik Raveendran made changes -
                Field Original Value New Value
                Epic Link IGBF-3765 [ 22984 ]
                karthik Karthik Raveendran made changes -
                Link This issue relates to IGBF-4100 [ IGBF-4100 ]
                karthik Karthik Raveendran made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
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                karthik Karthik Raveendran added a comment -

                Changes implemented. See commit

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                karthik Karthik Raveendran added a comment - Changes implemented. See commit
                karthik Karthik Raveendran made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 [ 212 ] Spring 3, Spring 4 [ 212, 213 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Summary Change "Samtools Tags" to just SamTags for SamTags features Change Samtools Tags to SAMtags
                nfreese Nowlan Freese made changes -
                Description Samtools Tags may be a mouthful for the user. Change the name to SamTags so that users and future developers can easily refer to the features. Samtools Tags may be a mouthful for the user. Change the name to SAMtags so that users and future developers can easily refer to the features.
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                nfreese Nowlan Freese added a comment -

                Changes included in this PR.

                Tested using main branch installer on Mac.

                Filter and Color are showing SAMTags instead of SAMtags. If we are going by the samtools documentation it should be SAMtags. I'm also confused because the commit for this ticket shows SAMtags.

                Show
                nfreese Nowlan Freese added a comment - Changes included in this PR . Tested using main branch installer on Mac. Filter and Color are showing SAMTags instead of SAMtags. If we are going by the samtools documentation it should be SAMtags. I'm also confused because the commit for this ticket shows SAMtags.
                nfreese Nowlan Freese made changes -
                Assignee Karthik Raveendran [ karthik ]
                nfreese Nowlan Freese made changes -
                Status Post-merge Testing In Progress [ 10003 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3942 [ IGBF-3942 ]
                karthik Karthik Raveendran made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3, Spring 4 [ 212, 213 ] Spring 3, Spring 4, Spring 5 [ 212, 213, 214 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
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                karthik Karthik Raveendran added a comment - - edited

                Changed all references of SamTags to SAMtags including classnames to avoid confusion with samtools references in the rest of the codebase. Rebased the branch to IGBF-4098. See commit (Edited)

                Show
                karthik Karthik Raveendran added a comment - - edited Changed all references of SamTags to SAMtags including classnames to avoid confusion with samtools references in the rest of the codebase. Rebased the branch to IGBF-4098 . See commit (Edited)
                karthik Karthik Raveendran made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Assignee Karthik Raveendran [ karthik ]
                karthik Karthik Raveendran made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                karthik Karthik Raveendran made changes -
                Assignee Karthik Raveendran [ karthik ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3, Spring 4, Spring 5 [ 212, 213, 214 ] Spring 3, Spring 4, Spring 5, Spring 6 [ 212, 213, 214, 215 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Assignee Paige Kulzer [ pkulzer ]
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                pkulzer Paige Kulzer (Inactive) added a comment -

                Tested using main branch installer on Mac. Filter and Color by are now using "SAMtags" consistently. I also looked through the commit and visually confirmed that all instances of "SAMTags" has been switched to "SAMtags". Closing this ticket!

                Show
                pkulzer Paige Kulzer (Inactive) added a comment - Tested using main branch installer on Mac. Filter and Color by are now using "SAMtags" consistently. I also looked through the commit and visually confirmed that all instances of "SAMTags" has been switched to "SAMtags". Closing this ticket!
                pkulzer Paige Kulzer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Assignee Paige Kulzer [ pkulzer ] Karthik Raveendran [ karthik ]

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    karthik Karthik Raveendran
                  • Votes:
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                    Dates

                    • Created:
                      Updated:
                      Resolved: