Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4119

Add UB and UR to list of Sam Tag options

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: 10.2.0
        • Labels:
          None

          Description

          Situation: The UB samtag represents the chromium molecular barcode sequence that is error-corrected. I would like to be able to filter/color by this tag.

          Task Add UB to list of Sam Tag options.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3942 Add the ability to add multiple values for Color by

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                6 older comments
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                PR is merged into main, installers are built and copied to the early access section of the bioviz.org website.

                Ready for final testing.

                Show
                ann.loraine Ann Loraine added a comment - PR is merged into main, installers are built and copied to the early access section of the bioviz.org website. Ready for final testing.
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                Can we add UR to the list of SAMtags?

                Show
                nfreese Nowlan Freese added a comment - Can we add UR to the list of SAMtags?
                Hide
                Permalink
                karthik Karthik Raveendran added a comment - - edited

                Added UR to the Samtags list. Rebased the branch to IGBF-4118. See commit

                Show
                karthik Karthik Raveendran added a comment - - edited Added UR to the Samtags list. Rebased the branch to IGBF-4118 . See commit
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                Tested Karthik's branch on Mac.

                Able to use UR value for Color and Filter by.

                Ready for PR.

                Show
                nfreese Nowlan Freese added a comment - Tested Karthik's branch on Mac. Able to use UR value for Color and Filter by. Ready for PR.
                Hide
                Permalink
                pkulzer Paige Kulzer (Inactive) added a comment -

                Tested using main branch installer on Mac. Filter and Color by are now displaying the "UB" and "UR" tags. All filtering and coloring functions appear to be working as expected with these new tags.

                Closing this ticket!

                Show
                pkulzer Paige Kulzer (Inactive) added a comment - Tested using main branch installer on Mac. Filter and Color by are now displaying the "UB" and "UR" tags. All filtering and coloring functions appear to be working as expected with these new tags. Closing this ticket!

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    5 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: