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  1. IGB
  2. IGBF-4140

Generate trackDb.txt file

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Sample trackDb.txt:
          track Araport
          bigDataUrl https://bitbucket.org/lorainelab_udaya/testquickload/downloads/Araport11.bb
          shortLabel Araport 2019
          longLabel Protein-coding gene models from Araport 11, Nov. 2015
          type bigBed 12 +
          visibility dense

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              Task - A task that needs to be done. IGBF-4162 Make required changes in front end for quickload to trackhub conversion

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed

                Activity

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                uchinta Udaya Chinta (Inactive) created issue -
                uchinta Udaya Chinta (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-2831 [ 19524 ]
                uchinta Udaya Chinta (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 4 [ 213 ] Spring 4, Spring 5 [ 213, 214 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                uchinta Udaya Chinta (Inactive) made changes -
                Description *Sample trackDb.txt:*
                track Araport
                bigDataUrl https://bitbucket.org/lorainelab_udaya/testquickload/downloads/Araport11.bb
                shortLabel Araport 2019
                longLabel Protein-coding gene models from Araport 11, Nov. 2015
                type bigBed 12 +
                visibility dense
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                uchinta Udaya Chinta (Inactive) added a comment -

                Commit 3:
                changes to generate trackDb.txt
                trackDb.txt : http://127.0.0.1:8000/api/igbTrackHubs?quickLoadUrl=http://igbquickload.org/quickload&filePath=/ce6/trackDb.txt

                Show
                uchinta Udaya Chinta (Inactive) added a comment - Commit 3: changes to generate trackDb.txt trackDb.txt : http://127.0.0.1:8000/api/igbTrackHubs?quickLoadUrl=http://igbquickload.org/quickload&filePath=/ce6/trackDb.txt
                uchinta Udaya Chinta (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
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                uchinta Udaya Chinta (Inactive) added a comment -

                I created this ticket for tracking purpose but made changes as part of 4105.

                Show
                uchinta Udaya Chinta (Inactive) added a comment - I created this ticket for tracking purpose but made changes as part of 4105.
                uchinta Udaya Chinta (Inactive) made changes -
                Assignee Udaya Chinta [ uchinta ]
                uchinta Udaya Chinta (Inactive) made changes -
                Link This issue relates to IGBF-4162 [ IGBF-4162 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 4, Spring 5 [ 213, 214 ] Spring 4, Spring 5, Spring 6 [ 213, 214, 215 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
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                nfreese Nowlan Freese added a comment -

                Testing on Chrome:
                The trackDb.txt appears correct: https://translate.bioviz.org/api/igbTrackHubs?quickLoadUrl=https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/quickload1&filePath=/A_thaliana_Jun_2009/trackDb.txt

                However, this does not work when I add it as a UCSC Track Hub. I have created IGBF-4192 to further test this.

                As the trackDb.txt is being returned, closing ticket.

                Show
                nfreese Nowlan Freese added a comment - Testing on Chrome: The trackDb.txt appears correct: https://translate.bioviz.org/api/igbTrackHubs?quickLoadUrl=https://api.bitbucket.org/2.0/repositories/lorainelab_udaya/testquickload/src/main/quickload1&filePath=/A_thaliana_Jun_2009/trackDb.txt However, this does not work when I add it as a UCSC Track Hub. I have created IGBF-4192 to further test this. As the trackDb.txt is being returned, closing ticket.
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Udaya Chinta [ uchinta ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-4192 [ IGBF-4192 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    uchinta Udaya Chinta (Inactive)
                    Reporter:
                    uchinta Udaya Chinta (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: