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  1. IGB
  2. IGBF-4143

Retrieve the BAM files for Rasha's single cell study

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Purpose: To retrieve the BAM files for single cell sequencing from Rasha's tomato project.

          Rob reached out to Rasha and she has agreed to share her alignments.
          Will get them and make available to those who so desire.

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              Task - A task that needs to be done. IGBF-4144 SRA submission of single cell RNA study

              • Major - Major loss of function.
              • Closed

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                robofjoy Robert Reid added a comment -

                Rasha has shared the BAM files in a Google Drive. A temp location. though. We need to get them elsewhere.

                I will pull them down and get them on the cluster. And into a Google drive location in the GTTR as well.

                Show
                robofjoy Robert Reid added a comment - Rasha has shared the BAM files in a Google Drive. A temp location. though. We need to get them elsewhere. I will pull them down and get them on the cluster. And into a Google drive location in the GTTR as well.
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                robofjoy Robert Reid added a comment -

                These are too large for GTTR google drive (100+ GB)

                So they will only reside on the HPC:

                Bam files were loaded onto the HPC cluster at

                /projects/tomato_genome/rnaeq/rasha-singlecell

                Show
                robofjoy Robert Reid added a comment - These are too large for GTTR google drive (100+ GB) So they will only reside on the HPC: Bam files were loaded onto the HPC cluster at /projects/tomato_genome/rnaeq/rasha-singlecell

                  People

                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    robofjoy Robert Reid
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                    • Created:
                      Updated:
                      Resolved: