Details
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Type:
Task
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Spring 5, Spring 7, Spring 8, Summer 1
Description
GOAL: To look at the reference guided results (reads ---> nextflow -----> salmon ---> deseq2)
and compare the # of genes expressed to the de novo pipeline results.
Need the deseq results from de novo pipeline.
Need deseq results from reference based pipline (Molly's script).
Compare!!
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 5 [ 214 ] | Spring 5, Spring 6 [ 214, 215 ] |
| Rank | Ranked higher |
| Sprint | Spring 5, Spring 6 [ 214, 215 ] | Spring 5, Spring 7 [ 214, 216 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Spring 5, Spring 7 [ 214, 216 ] | Spring 5, Spring 7, Spring 8 [ 214, 216, 217 ] |
| Rank | Ranked higher |
| Sprint | Spring 5, Spring 7, Spring 8 [ 214, 216, 217 ] | Spring 5, Spring 7, Spring 8, Summer 1 [ 214, 216, 217, 218 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Spring 5, Spring 7, Spring 8, Summer 1 [ 214, 216, 217, 218 ] | Spring 5, Spring 7, Spring 8, Summer 1, Summer 2 [ 214, 216, 217, 218, 219 ] |
| Rank | Ranked higher |
| Description |
GOAL: To look at the reference guided results (reads ---> nextflow -----> salmon ---> deseq2) and compare the # of genes expressed to the de novo pipeline results. Need the deseq results from de novo pipeline. Need deseq results from reference based pipline (Molly's script). Compare!! |
GOAL: To look at the reference guided results (reads ---> nextflow -----> salmon ---> deseq2) and compare the # of genes expressed to the de novo pipeline results. Need the deseq results from de novo pipeline. Need deseq results from reference based pipline (Molly's script). Compare!! |
| Sprint | Spring 5, Spring 7, Spring 8, Summer 1, Summer 2 [ 214, 216, 217, 218, 219 ] | Spring 5, Spring 7, Spring 8, Summer 1, Summer 3 [ 214, 216, 217, 218, 220 ] |
| Description |
GOAL: To look at the reference guided results (reads ---> nextflow -----> salmon ---> deseq2) and compare the # of genes expressed to the de novo pipeline results. Need the deseq results from de novo pipeline. Need deseq results from reference based pipline (Molly's script). Compare!! |
GOAL: To look at the reference guided results (reads ---> nextflow -----> salmon ---> deseq2)
and compare the # of genes expressed to the de novo pipeline results. Need the deseq results from de novo pipeline. Need deseq results from reference based pipline (Molly's script). Compare!! |
| Sprint | Spring 5, Spring 7, Spring 8, Summer 1, Summer 3 [ 214, 216, 217, 218, 220 ] | Spring 5, Spring 7, Spring 8, Summer 1 [ 214, 216, 217, 218 ] |