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  1. IGB
  2. IGBF-4149

Find overlapping genes between de novo and tradiotnal ref. based pipeline

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          GOAL: To look at the reference guided results (reads ---> nextflow -----> salmon ---> deseq2)
          and compare the # of genes expressed to the de novo pipeline results.

          Need the deseq results from de novo pipeline.

          Need deseq results from reference based pipline (Molly's script).

          Compare!!

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                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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                  • Created:
                    Updated: