Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 8, Summer 1
Description
GOAL: To run GAGE on Kelsey's unpollinated pistil data.
We have reached the need for further annotation of the results.
Will try a first pass at geting the R code to work, and then pass it along to Brandon to try the various permutations of the experiment.
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 8 [ 217 ] | Spring 8, Summer 1 [ 217, 218 ] |
| Rank | Ranked higher |
Trying the updated table made by Brandon.
Is here:
https://drive.google.com/file/d/1o7yeWg2BDzlHPJHshyT3r5bi9LWjVVKp/view?usp=drive_link
Table is now a TPM normalized.
And had a column of RefSeq Ids and Kegg IDs.
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Close this ticket out and make new ones as needed as we have all sorts of new things to troubleshoot.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
PathView runs great on the data.
Gage however has been causing me fits. There is something about the table that gage does not like
Tested code on a Sweet potato dataset and it all works great.