Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4210

Search for updated KEGG Ids for tomato

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Goal: To search out there if there are any more recent files that map KEGG ids to Soly Ids.

          I did this back in 2021 and grabbed what was available at the time. Maybe there are better resources now.

          Search the world. See what we can find that is updated.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-4205 GAGE and Pathview on Kelsey Unpol data

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                robofjoy Robert Reid created issue -
                robofjoy Robert Reid made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                robofjoy Robert Reid made changes -
                Link This issue blocks IGBF-4205 [ IGBF-4205 ]
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ] Brandon Bendickson [ bbendick ]
                Hide
                Permalink
                bbendick Brandon Bendickson added a comment -

                This is kind of the same as 4215. We are getting Kegg ids by mapping the SolyIDs to Refseq ids by BLAST

                Show
                bbendick Brandon Bendickson added a comment - This is kind of the same as 4215. We are getting Kegg ids by mapping the SolyIDs to Refseq ids by BLAST
                bbendick Brandon Bendickson made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                bbendick Brandon Bendickson made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                bbendick Brandon Bendickson made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                bbendick Brandon Bendickson made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                bbendick Brandon Bendickson made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                bbendick Brandon Bendickson made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                bbendick Brandon Bendickson made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                bbendick Brandon Bendickson made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    bbendick Brandon Bendickson
                    Reporter:
                    robofjoy Robert Reid
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: