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  1. IGB
  2. IGBF-4221

Explore IGB Apps for SAMtags

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          IGB Apps would be a better UI option for SAMtags. This ticket is a exploration of that possibility.

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              relates to

              Task - A task that needs to be done. IGBF-4193 Fix SAMtag selection change error

              • Major - Major loss of function.
              • Closed

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                ann.loraine Ann Loraine added a comment -

                This seems to be resolved. Moving to DONE.

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                ann.loraine Ann Loraine added a comment - This seems to be resolved. Moving to DONE.
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                ann.loraine Ann Loraine added a comment -

                We talked about this in the office Friday and developed some theories about what may be going on. I will follow up and report back here.

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                ann.loraine Ann Loraine added a comment - We talked about this in the office Friday and developed some theories about what may be going on. I will follow up and report back here.
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                karthik Karthik Raveendran added a comment - - edited

                UCSC GenArk App app has a UI that can be repurposed for SAMtags Filter and Color by.

                Filter by Score app suggests that IGB Operations API can be used to trigger the filter function. However, I am not sure if the app itself is complete. It has one file that does not really trigger the track filter operation but adds a option in the filter dropdown which the user can choose in the Filter window. Please see image attached to see what I mean by filter dropdown

                In order for a SAMtag app to work, we may have to create an API for what happens after hitting the OK button(see image) and passing the user entered data to that API which may be difficult to implement.

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                karthik Karthik Raveendran added a comment - - edited UCSC GenArk App app has a UI that can be repurposed for SAMtags Filter and Color by. Filter by Score app suggests that IGB Operations API can be used to trigger the filter function. However, I am not sure if the app itself is complete. It has one file that does not really trigger the track filter operation but adds a option in the filter dropdown which the user can choose in the Filter window. Please see image attached to see what I mean by filter dropdown In order for a SAMtag app to work, we may have to create an API for what happens after hitting the OK button(see image) and passing the user entered data to that API which may be difficult to implement.

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    karthik Karthik Raveendran
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                    • Created:
                      Updated:
                      Resolved: