Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Summer 1, Summer 2, Summer 3
Description
IGB Apps would be a better UI option for SAMtags. This ticket is a exploration of that possibility.
Attachments
Issue Links
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3765 [ 22984 ] |
| Description | IGB Apps would be a better UI option for SAMtags. This ticket is a exploration of that possibility |
IGB Apps would be a better UI option for SAMtags. This ticket is a exploration of that possibility.
UCSC GenArk [Filter by Score | https://bitbucket.org/lorainelab/filter-by-score/src/master/] app suggests that IGB Operations API can be used to trigger the filter function. However, I am not sure if the app itself is complete. It has one filter file that does not really trigger the filter function but adds a option in the filter dropdown where you can |
| Description |
IGB Apps would be a better UI option for SAMtags. This ticket is a exploration of that possibility.
UCSC GenArk [Filter by Score | https://bitbucket.org/lorainelab/filter-by-score/src/master/] app suggests that IGB Operations API can be used to trigger the filter function. However, I am not sure if the app itself is complete. It has one filter file that does not really trigger the filter function but adds a option in the filter dropdown where you can |
IGB Apps would be a better UI option for SAMtags. This ticket is a exploration of that possibility.
|
| Attachment | Filter Dropdown.png [ 18696 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
We talked about this in the office Friday and developed some theories about what may be going on. I will follow up and report back here.
| Sprint | Summer 1 [ 218 ] | Summer 1, Summer 2 [ 218, 219 ] |
| Rank | Ranked higher |
| Sprint | Summer 1, Summer 2 [ 218, 219 ] | Summer 1, Summer 2, Summer 3 [ 218, 219, 220 ] |
| Rank | Ranked higher |
This seems to be resolved. Moving to DONE.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
UCSC GenArk App app has a UI that can be repurposed for SAMtags Filter and Color by.
Filter by Score app suggests that IGB Operations API can be used to trigger the filter function. However, I am not sure if the app itself is complete. It has one file that does not really trigger the track filter operation but adds a option in the filter dropdown which the user can choose in the Filter window. Please see image attached to see what I mean by filter dropdown
In order for a SAMtag app to work, we may have to create an API for what happens after hitting the OK button(see image) and passing the user entered data to that API which may be difficult to implement.