Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4247

Investigate Ascorbate Path Genes of Interest

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None

      Description

      Lets investigate some of the genes that Ravi pointed out. You should follow this general process:

      Go to Kegg site ---> click pathways ---> Enter our path of interest, the prefix is "sly" and the code is 00053 ---> click the pathway ---> click genes of interest from that photo of our path which has them circled ---> get Kegg ID from top left ---> get soly ID with Kegg ID from "soly mapping file" ---> find chromosome coordinates with soly ID from GFF file.

        Attachments

          Activity

          bbendick Brandon Bendickson created issue -
          bbendick Brandon Bendickson made changes -
          Field Original Value New Value
          Epic Link IGBF-2993 [ 21429 ]
          abecerri Alex Becerril Cruz (Inactive) made changes -
          Status To-Do [ 10305 ] In Progress [ 3 ]
          ann.loraine Ann Loraine made changes -
          Sprint Summer 2 [ 219 ] Summer 2, Summer 3 [ 219, 220 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          abecerri Alex Becerril Cruz (Inactive) made changes -
          Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
          ann.loraine Ann Loraine made changes -
          Sprint Summer 2, Summer 3 [ 219, 220 ] Summer 2, Summer 3, Summer 4 [ 219, 220, 221 ]
          ann.loraine Ann Loraine made changes -
          Rank Ranked higher
          robofjoy Robert Reid made changes -
          Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
          robofjoy Robert Reid made changes -
          Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
          robofjoy Robert Reid made changes -
          Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
          robofjoy Robert Reid made changes -
          Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
          robofjoy Robert Reid made changes -
          Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
          robofjoy Robert Reid made changes -
          Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
          robofjoy Robert Reid made changes -
          Resolution Done [ 10000 ]
          Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

            People

            • Assignee:
              abecerri Alex Becerril Cruz (Inactive)
              Reporter:
              bbendick Brandon Bendickson
            • Votes:
              0 Vote for this issue
              Watchers:
              1 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: