Before upgrade hub-facade uses python <=3.10, django==3.2.3

Upgraded to python 3.13, django 4.2.10, other dependencies upgraded based on these versions.

Branch changes:
https://bitbucket.org/lorainelab-deepthi/hub-facade/branch/IGBF-4326

The libraries have newer versions available, but after discussing with Deepthi, the current upgraded versions are considered the most stable for Python 3.13.
Hence moving the ticket to PR.

Currently all the libraries are upgraded but I think python version needs to be upgraded in server.
Cc : saideepthi jagarapu

saideepthi jagarapu I have a doubt about the upgrade.

On the host (dev2025) there is a file named "requirements.txt" which I believe is the list of versions of libraries and dependencies that will be deployed to the host when we run deploy using ansible.

The "requirements.txt" file that is current is listing versions that don't match what is listed above. Here is what is in the file "requirements.txt":

ubuntu $ more requirements.txt 
asgiref==3.3.4
certifi==2021.5.30
chardet==4.0.0
Django==3.2.3
django-cors-headers==3.10.0
idna==2.10
python-decouple==3.1
pytz==2021.1
requests==2.25.1
sqlparse==0.4.1
urllib3==1.26.6

I think this is because the branch that is deployed on the testing host is actually branch "main".

To truly test the deployment of upgraded libraries, we need to deploy your new branch (IGBF-4326) on the testing host.

You can do this by configured the inventory.ini file, I believe. Using the inventory.ini file, I think you can specify both the branch you want to deploy (for testing) and the repository (your fork).

Can you take a look and re-run the playbooks using your repository and your development branch (IGBF-4326) to deploy your new code onto the testing host dev2025.bioviz.org.

Sure Ann Loraine, I will deploy the developed branch with my fork and re-run the playbooks now.

Ann Loraine I have doubt here, this is the inventory.ini file

[hub_facade_hosts]
# this is what we're using for the production site (commented out)
# translate2 ansible_host=3.209.223.181 domain=translate.bioviz.org secret_key=dkasdkhjwns igb_repository=https://bitbucket.org/lorainelab/integrated-genome-browser/ igb_branch=main quickload_contents_txt=https://data.bioviz.org/quickload/contents.txt stack=Prod

# this is your test / development host target (for Deepthi)
dev2025 ansible_host=34.225.101.234 domain=dev2025.bioviz.org secret_key=dldlalkdselcekd igb_repository=https://bitbucket.org/lorainelab-deepthi/integrated-genome-browser/ igb_branch=main quickload_contents_txt=https://data.bioviz.org/quickload/contents.txt stack=Develop

[hub_facade_hosts:vars]
ansible_ssh_common_args="-o StrictHostKeyChecking=no"
ansible_ssh_user=ubuntu

Here igb_branch and repo is related to igb not hub-facade
So, do you think i should update the igb_branch to IGBF-4326 because this is developed branch in hub-facade not igb.

Update Ann Loraine Nowlan Freese
I made changes to setup_vars.yml to make use of my repo fork and branch.
Updated setup_vars.yml looks like this

---
### Variables needed to run setup.yml ###

#
# Hub facade code repository and branch to deploy
#
repo: https://bitbucket.org/lorainelab-deepthi/hub-facade.git
branch: IGBF-4326

#
# Certificates for supporting https. Place in files directory.
#
#ssl_cert_file:
#ssl_cert_key_file:
#ssl_chain_file:

ssl_cert_file: 2025.star.bioviz.org.crt
ssl_cert_key_file: 2025.star.bioviz.org.key
ssl_chain_file: 2025.star.bioviz.org.ca-bundle

#
# Web apps deploy directory
#
app_dir: /var/www/vhosts
...

I have tested the dev deployment with these changes by deploying udaya's trackhub changes as I couldn't see any visible UI change with 4326 dependency upgrade to figure out if the branch is deployed to dev or not.

Now, I have test new changes in dev after deploying IGBF-4326 changes, and everything works as expected.

PR https://bitbucket.org/lorainelab/hub-facade/pull-requests/53

PR is merged.

Tested the changes. Everything is working as expected.