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  1. IGB
  2. IGBF-4371

Fix SAMtools tag color opening behind Color By window on Mac

        Details

        • Type: Improvement
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: 10.2.0
        • Labels:
          None

          Description

          Situation: The SAMtools Tag Color Mapping window opens behind the Color By parent window on Mac. It should open in front of the Color By window.

          Task: Fix it so that the SAMtools Tag Color Mapping window opens in front of the Color By window.

          To reproduce:

          1. Open the hg38 human genome (H_sapiens_Dec_2013)
          2. Go to chr16:28,931,601-28,939,711
          3. Select File > Open URL...
          4. Paste the following URL and click OK - https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/H_sapiens_Dec_2013/Bam/BAM_hg38_10k_PBMC_CD19.bam
          5. Click Load Data
          6. Right-click on the track label and select Color by...
          7. In the Color By dropdown, select SAMtags
          8. Click Configure Tag Color Mapping
          9. The SAMtools Tag Color Mapping will open behind the Color By window on Mac.

            Attachments

              Activity

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              nfreese Nowlan Freese created issue -
              nfreese Nowlan Freese made changes -
              Field Original Value New Value
              Epic Link IGBF-3765 [ 22984 ]
              nfreese Nowlan Freese made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
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              sjagarap saideepthi jagarapu (Inactive) added a comment -

              Branch code changes https://bitbucket.org/lorainelab-deepthi/integrated-genome-browser/branch/IGBF-popup
              attn Nowlan Freese

              Show
              sjagarap saideepthi jagarapu (Inactive) added a comment - Branch code changes https://bitbucket.org/lorainelab-deepthi/integrated-genome-browser/branch/IGBF-popup attn Nowlan Freese
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Assignee saideepthi jagarapu [ sjagarap ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              pkulzer Paige Kulzer (Inactive) made changes -
              Assignee Paige Kulzer [ pkulzer ]
              pkulzer Paige Kulzer (Inactive) made changes -
              Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
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              pkulzer Paige Kulzer (Inactive) added a comment -

              Tested Deepthi's changes locally, the SAMtools Tag Color Mapping window is no longer opening behind the Color By window. I didn't see any new issues with the Color By functionality as a result of this change. Ready for next steps!

              Show
              pkulzer Paige Kulzer (Inactive) added a comment - Tested Deepthi's changes locally, the SAMtools Tag Color Mapping window is no longer opening behind the Color By window. I didn't see any new issues with the Color By functionality as a result of this change. Ready for next steps!
              pkulzer Paige Kulzer (Inactive) made changes -
              Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
              pkulzer Paige Kulzer (Inactive) made changes -
              Assignee Paige Kulzer [ pkulzer ] saideepthi jagarapu [ sjagarap ]
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              sjagarap saideepthi jagarapu (Inactive) added a comment -

              This commit is handled and added to actual Samstag release branch by karthik.

              Closing the ticket.

              Show
              sjagarap saideepthi jagarapu (Inactive) added a comment - This commit is handled and added to actual Samstag release branch by karthik. Closing the ticket.
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
              sjagarap saideepthi jagarapu (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
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              nfreese Nowlan Freese added a comment -

              Deepthi's fix is included in this PR: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1088

              Show
              nfreese Nowlan Freese added a comment - Deepthi's fix is included in this PR: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1088
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              ann.loraine Ann Loraine added a comment -

              PR is merged.

              Show
              ann.loraine Ann Loraine added a comment - PR is merged.
              nfreese Nowlan Freese made changes -
              Fix Version/s 10.2.0 [ 11100 ]

                People

                • Assignee:
                  sjagarap saideepthi jagarapu (Inactive)
                  Reporter:
                  nfreese Nowlan Freese
                • Votes:
                  0 Vote for this issue
                  Watchers:
                  4 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: