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  1. IGB
  2. IGBF-4410

Summarize Salmon counts table so that we can see number of reads

        Details

        • Type: Task
        • Status: Needs 1st Level Review (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          GOAL: We have 160+ columns of data.

          It would be nice to see a distribution of how many reads we have per sample.

          Let's pull the salmon counts table in R.
          And then look up ways we can summarize this, i.e., distribution curve, etc.....

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              robofjoy Robert Reid created issue -
              robofjoy Robert Reid made changes -
              Field Original Value New Value
              Epic Link IGBF-2993 [ 21429 ]
              robofjoy Robert Reid made changes -
              Status To-Do [ 10305 ] In Progress [ 3 ]
              mserkin Milana Serkin made changes -
              Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
              mserkin Milana Serkin made changes -
              Attachment plot_combined_all.JPG [ 19150 ]
              Attachment plot_batch_colored.JPG [ 19151 ]
              Attachment plot_no_undetermined.JPG [ 19152 ]
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              mserkin Milana Serkin added a comment -

              Tables were inserted here: https://docs.google.com/presentation/d/17Jk_Di338UJxkExURRhx23d-Do1meAHGK8Ua7Fw62fg/edit?usp=sharing.

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              mserkin Milana Serkin added a comment - Tables were inserted here: https://docs.google.com/presentation/d/17Jk_Di338UJxkExURRhx23d-Do1meAHGK8Ua7Fw62fg/edit?usp=sharing .
              mserkin Milana Serkin made changes -
              Assignee Milana Serkin [ mserkin ] Robert Reid [ robertreid ]
              ann.loraine Ann Loraine made changes -
              Sprint Spring 3 [ 235 ] Spring 3, Summer 2026 [ 235, 236 ]
              ann.loraine Ann Loraine made changes -
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                • Assignee:
                  robofjoy Robert Reid
                  Reporter:
                  robofjoy Robert Reid
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                  Dates

                  • Created:
                    Updated: