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  1. IGB
  2. IGBF-4411

Add more SAMtags to SAMtags filter function

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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            is blocked by

            Bug - A problem which impairs or prevents the functions of the product. IGBF-4412 Fix issue with DAS test

            • Major - Major loss of function.
            • Closed

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              10 older comments
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              karthik Karthik Raveendran added a comment -

              PR Submitted https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1108

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              karthik Karthik Raveendran added a comment - PR Submitted https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1108
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              karthik Karthik Raveendran added a comment -

              Fix the code to make filter case sensitivity. See commit

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              karthik Karthik Raveendran added a comment - Fix the code to make filter case sensitivity. See commit
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              ann.loraine Ann Loraine added a comment -

              Thank you Karthik Raveendran!

              PR is merged and pipeline launched to build "installers for dev".

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              ann.loraine Ann Loraine added a comment - Thank you Karthik Raveendran ! PR is merged and pipeline launched to build "installers for dev".
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              ann.loraine Ann Loraine added a comment -

              Installers are built and deployed to bioviz.org early access section. Ready for final testing.

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              ann.loraine Ann Loraine added a comment - Installers are built and deployed to bioviz.org early access section. Ready for final testing.
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              nfreese Nowlan Freese added a comment -

              Testing installer on Mac.

              • Color By SAMtag "AS" works with value of 90.
              • Color By typed in value "CIGAR" works with value of 5M286N85M
              • Filter By SAMtag "AS" works with value of 90 for equals or does not equal.
              • Filter By SAMtag "CY" works with value of FFFFFFFFFFFFFF,F for equals or does not equal.
              • Filter By SAMtag "CB" is case sensitive for a value of ATCACTTAGAGAGaAC-1

              No errors in the logs.

              Closing ticket.

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              nfreese Nowlan Freese added a comment - Testing installer on Mac. Color By SAMtag "AS" works with value of 90. Color By typed in value "CIGAR" works with value of 5M286N85M Filter By SAMtag "AS" works with value of 90 for equals or does not equal. Filter By SAMtag "CY" works with value of FFFFFFFFFFFFFF,F for equals or does not equal. Filter By SAMtag "CB" is case sensitive for a value of ATCACTTAGAGAGaAC-1 No errors in the logs. Closing ticket.

                People

                • Assignee:
                  karthik Karthik Raveendran
                  Reporter:
                  karthik Karthik Raveendran
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                  Dates

                  • Created:
                    Updated:
                    Resolved: