Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-4419

Use API tokens in Loraine Lab Bitbucket pipelines

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Atlassian is going to retire all app passwords soon.

          We need to update all our pipeline-using repositories to use Atlassian API tokens instead of app passwords.

          For this, edit every pipelines file to use user-configured repositories EMAIL and TOKEN. In each repo, set these two values as follows:

          EMAIL: the one true email address used for some user who can run pipelines for a repository (e.g., aloraine@gmail.com)
          TOKEN: API token with the correct scope

          For an example, see the monster gaps app repo:
          https://bitbucket.org/lorainelab/reads-without-large-gaps

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-4420 Update Loraine Lab IGB app repos to use EMAIL, TOKEN repo variables

              • Major - Major loss of function.
              • To-Do

                Activity

                Ascending order - Click to sort in descending order
                Hide
                Permalink
                aloraine Ann Loraine added a comment -

                Made new branch: https://bitbucket.org/aloraine/integrated-genome-browser/src/IGBF-4419

                Show
                aloraine Ann Loraine added a comment - Made new branch: https://bitbucket.org/aloraine/integrated-genome-browser/src/IGBF-4419
                Hide
                Permalink
                aloraine Ann Loraine added a comment -

                Submitted and merged PR.

                Notes:

                • Using EMAIL and TOKEN repository variables
                • Repository variable "TOKEN" must have bitbucket:repository:write and bitbucket:repository:read scopes
                • The write scope is required to copy artifacts to Downloads folder
                • The read scope is required to access env.sh which has key info for the building of installers (using Install4J)
                • Only file I edited was the bitbucket pipelines YML configuration file
                Show
                aloraine Ann Loraine added a comment - Submitted and merged PR. Notes: Using EMAIL and TOKEN repository variables Repository variable "TOKEN" must have bitbucket:repository:write and bitbucket:repository:read scopes The write scope is required to copy artifacts to Downloads folder The read scope is required to access env.sh which has key info for the building of installers (using Install4J) Only file I edited was the bitbucket pipelines YML configuration file
                Hide
                Permalink
                aloraine Ann Loraine added a comment -

                Needed to update curl commands in "env.sh" accessed from iipc.

                Show
                aloraine Ann Loraine added a comment - Needed to update curl commands in "env.sh" accessed from iipc.
                Hide
                Permalink
                aloraine Ann Loraine added a comment -

                To test:

                Follow instructions in bitbucket YML file to create repository variables EMAIL and TOKEN.

                Make a note of anything that needs to be improve wrt documentation and instructions.

                Show
                aloraine Ann Loraine added a comment - To test: Follow instructions in bitbucket YML file to create repository variables EMAIL and TOKEN. Make a note of anything that needs to be improve wrt documentation and instructions.
                Hide
                Permalink
                aloraine Ann Loraine added a comment -

                Going out on a limb here and moving to DONE because my testing gave the expected result.

                Show
                aloraine Ann Loraine added a comment - Going out on a limb here and moving to DONE because my testing gave the expected result.

                  People

                  • Assignee:
                    aloraine Ann Loraine
                    Reporter:
                    aloraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    1 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: