Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Sprint 16
Description
Version noticed: 8.3.1 and 8.4.0
It seems that no gene models are being displayed when opening the S. cerevisiae genome. Furthermore, an exception is generated (see comment below).
Attachments
Activity
An exception is no longer being generated when opening this genome so this story will now be closed.
17:15:20.639 ERROR c.a.igb.view.load.GeneralLoadUtils - Error in loadOnSequence
java.lang.NumberFormatException: For input string: ***(String not supported in JIRA due to unusual characters)
at java.lang.NumberFormatException.forInputString(Unknown Source) ~[na:1.8.0_25]
at java.lang.Integer.parseInt(Unknown Source) ~[na:1.8.0_25]
at java.lang.Integer.parseInt(Unknown Source) ~[na:1.8.0_25]
at com.affymetrix.genometry.symloader.BED.parseLines(BED.java:490) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.symloader.SymLoader.buildIndex(SymLoader.java:93) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.symloader.BED.init(BED.java:96) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.symloader.BED.getChromosomeList(BED.java:104) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickLoadSymLoader.loadAndAddSymmetries(QuickLoadSymLoader.java:144) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickLoadSymLoader.loadSymmetriesThread(QuickLoadSymLoader.java:130) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickLoadSymLoader.loadFeatures(QuickLoadSymLoader.java:110) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickloadServerType.loadFeatures(QuickloadServerType.java:390) ~[genometry-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils.loadFeaturesForSym(GeneralLoadUtils.java:938) ~[igb-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils$2.loadOnSequence(GeneralLoadUtils.java:843) [igb-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils$2.lambda$multiThreadedLoad$66(GeneralLoadUtils.java:786) [igb-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils$2$$Lambda$200/1571802616.run(Unknown Source) [igb-8.4.0.jar:na]
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) [na:1.8.0_25]
at java.util.concurrent.FutureTask.run(Unknown Source) [na:1.8.0_25]
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:1.8.0_25]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:1.8.0_25]
at java.lang.Thread.run(Unknown Source) [na:1.8.0_25]