Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Sprint 16
Description
Version noticed: 8.3.1 and 8.4.0
It seems that no gene models are being displayed when opening the S. cerevisiae genome. Furthermore, an exception is generated (see comment below).
Attachments
Activity
17:15:20.639 ERROR c.a.igb.view.load.GeneralLoadUtils - Error in loadOnSequence
java.lang.NumberFormatException: For input string: ***(String not supported in JIRA due to unusual characters)
at java.lang.NumberFormatException.forInputString(Unknown Source) ~[na:1.8.0_25]
at java.lang.Integer.parseInt(Unknown Source) ~[na:1.8.0_25]
at java.lang.Integer.parseInt(Unknown Source) ~[na:1.8.0_25]
at com.affymetrix.genometry.symloader.BED.parseLines(BED.java:490) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.symloader.SymLoader.buildIndex(SymLoader.java:93) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.symloader.BED.init(BED.java:96) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.symloader.BED.getChromosomeList(BED.java:104) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickLoadSymLoader.loadAndAddSymmetries(QuickLoadSymLoader.java:144) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickLoadSymLoader.loadSymmetriesThread(QuickLoadSymLoader.java:130) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickLoadSymLoader.loadFeatures(QuickLoadSymLoader.java:110) ~[genometry-8.4.0.jar:na]
at com.affymetrix.genometry.quickload.QuickloadServerType.loadFeatures(QuickloadServerType.java:390) ~[genometry-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils.loadFeaturesForSym(GeneralLoadUtils.java:938) ~[igb-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils$2.loadOnSequence(GeneralLoadUtils.java:843) [igb-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils$2.lambda$multiThreadedLoad$66(GeneralLoadUtils.java:786) [igb-8.4.0.jar:na]
at com.affymetrix.igb.view.load.GeneralLoadUtils$2$$Lambda$200/1571802616.run(Unknown Source) [igb-8.4.0.jar:na]
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) [na:1.8.0_25]
at java.util.concurrent.FutureTask.run(Unknown Source) [na:1.8.0_25]
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source) [na:1.8.0_25]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) [na:1.8.0_25]
at java.lang.Thread.run(Unknown Source) [na:1.8.0_25]
An exception is no longer being generated when opening this genome so this story will now be closed.