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  1. IGB
  2. IGBF-610

Selecting "Make Track" in the Graph Thresholds Dialogue generates an exception

    Details

      Description

      An exception is generated when selecting "Make Track" in the Graph Thresholds Dialogue.

      To reproduce:

      1) Create a graph in IGB
      2) Select the graph and then go to the Graphs tab
      3) Click the "Thresholding..." button
      4) Turn "Visibility" to "On" and then click "Make Track"

      *Observe: an exception is generated in the console (see below for exception)

      Exception in thread "AWT-EventQueue-0" java.util.ConcurrentModificationException
      at java.util.ArrayList$ArrayListSpliterator.forEachRemaining(Unknown Source)
      at java.util.stream.AbstractPipeline.copyInto(Unknown Source)
      at java.util.stream.AbstractPipeline.wrapAndCopyInto(Unknown Source)
      at java.util.stream.ForEachOps$ForEachOp.evaluateSequential(Unknown Source)
      at java.util.stream.ForEachOps$ForEachOp$OfRef.evaluateSequential(Unknown Source)
      at java.util.stream.AbstractPipeline.evaluate(Unknown Source)
      at java.util.stream.ReferencePipeline.forEach(Unknown Source)
      at com.affymetrix.igb.thresholding.GraphScoreThreshSetter.doAction(GraphScoreThreshSetter.java:546)
      at com.affymetrix.igb.thresholding.GraphScoreThreshSetter.actionPerformed(GraphScoreThreshSetter.java:474)
      at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
      at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
      at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
      at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
      at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source)
      at java.awt.Component.processMouseEvent(Unknown Source)
      at javax.swing.JComponent.processMouseEvent(Unknown Source)
      at java.awt.Component.processEvent(Unknown Source)
      at java.awt.Container.processEvent(Unknown Source)
      at java.awt.Component.dispatchEventImpl(Unknown Source)
      at java.awt.Container.dispatchEventImpl(Unknown Source)
      at java.awt.Component.dispatchEvent(Unknown Source)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
      at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
      at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
      at java.awt.Container.dispatchEventImpl(Unknown Source)
      at java.awt.Window.dispatchEventImpl(Unknown Source)
      at java.awt.Component.dispatchEvent(Unknown Source)
      at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
      at java.awt.EventQueue.access$500(Unknown Source)
      at java.awt.EventQueue$3.run(Unknown Source)
      at java.awt.EventQueue$3.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue$4.run(Unknown Source)
      at java.awt.EventQueue$4.run(Unknown Source)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)
      at java.awt.EventQueue.dispatchEvent(Unknown Source)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
      at java.awt.EventDispatchThread.run(Unknown Source)

        Attachments

          Activity

          mason Mason Meyer (Inactive) created issue -
          mason Mason Meyer (Inactive) made changes -
          Field Original Value New Value
          Epic Link IGBF-497 [ 15559 ]
          mason Mason Meyer (Inactive) made changes -
          Fix Version/s 8.3.3 Minor Release [ 10000 ]
          mason Mason Meyer (Inactive) made changes -
          Sprint Sprint 19 [ 24 ]
          mason Mason Meyer (Inactive) made changes -
          Rank Ranked lower
          dcnorris David Norris (Inactive) made changes -
          Story Points 0.5
          dcnorris David Norris (Inactive) made changes -
          Assignee David Norris [ dcnorris ]
          dcnorris David Norris (Inactive) made changes -
          Story Points 0.5 0.25
          ann.loraine Ann Loraine made changes -
          Fix Version/s 8.4.0 Major Release [ 10001 ]
          Fix Version/s 8.3.3 Minor Release [ 10000 ]
          dcnorris David Norris (Inactive) made changes -
          Sprint Sprint 19 [ 24 ]
          dcnorris David Norris (Inactive) made changes -
          Sprint Sprint 20 [ 25 ]
          dcnorris David Norris (Inactive) made changes -
          Rank Ranked higher
          dcnorris David Norris (Inactive) made changes -
          Fix Version/s 8.3.4 Minor Release [ 10000 ]
          Fix Version/s 8.4.0 Major Release [ 10001 ]
          dcnorris David Norris (Inactive) made changes -
          Sprint Sprint 20 [ 25 ] Sprint 19 [ 24 ]
          dcnorris David Norris (Inactive) made changes -
          Rank Ranked lower
          dcnorris David Norris (Inactive) made changes -
          Resolution Done [ 10000 ]
          Status Open [ 1 ] Closed [ 6 ]
          ann.loraine Ann Loraine made changes -
          Workflow Loraine Lab Workflow [ 15890 ] Fall 2019 Workflow Update [ 19464 ]
          ann.loraine Ann Loraine made changes -
          Workflow Fall 2019 Workflow Update [ 19464 ] Revised Fall 2019 Workflow Update [ 21581 ]

            People

            • Assignee:
              dcnorris David Norris (Inactive)
              Reporter:
              mason Mason Meyer (Inactive)
            • Votes:
              0 Vote for this issue
              Watchers:
              1 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved: