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  1. IGB
  2. IGBF-753

Add new zebrafish genome

        Details

        • Story Points:
          0.25
        • Epic Link:
        • Sprint:
          Sprint 33, Sprint 34, Winter 2018 Sprint 2

          Description

          Zebrafish is one of the primary model organisms being studied by researchers. In September 2014 a new version of the genome was released. This new genome version needs to be added to IGB Quickload.

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              relates to

              Task - A task that needs to be done. IGBF-3330 Add mm39 (GRCm39) mouse genome to IGB

              • Major - Major loss of function.
              • Closed

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                ann.loraine Ann Loraine added a comment - - edited

                Follow this guide:

                "Add a new UCSC-managed genome to IGB Quickload"

                in Bioinformatics Data Manager google drive folder

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                ann.loraine Ann Loraine added a comment - - edited Follow this guide: "Add a new UCSC-managed genome to IGB Quickload" in Bioinformatics Data Manager google drive folder
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                Jill Jill Jenkins (Inactive) added a comment -

                I have added the May 2017 assembly as per the user guide & tested in IGB.

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                Jill Jill Jenkins (Inactive) added a comment - I have added the May 2017 assembly as per the user guide & tested in IGB.
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                ann.loraine Ann Loraine added a comment -

                Committed D_rerio_May_2017 changes to subversion repo.
                Updated on:

                • renci host
                • uncc host
                • aws host
                Show
                ann.loraine Ann Loraine added a comment - Committed D_rerio_May_2017 changes to subversion repo. Updated on: renci host uncc host aws host
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                ann.loraine Ann Loraine added a comment -

                Re-assign to original developer

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                ann.loraine Ann Loraine added a comment - Re-assign to original developer

                  People

                  • Assignee:
                    Jill Jill Jenkins (Inactive)
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated:
                      Resolved: