[IGBF-861] Protannot NPE when selecting a gene model and sub selection of another gene model - JIRA UNCC

Details

Type: Bug
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
- ProtAnnot

Story Points:
0
Sprint:
Sprint 25

Description

Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at org.bioviz.protannot.model.ProtannotParser.checkTranslationLength(ProtannotParser.java:619)
at org.bioviz.protannot.model.ProtannotParser.parse(ProtannotParser.java:156)
at org.bioviz.protannot.ProtAnnotAction.load(ProtAnnotAction.java:717)
at org.bioviz.protannot.ProtAnnotAction.actionPerformed(ProtAnnotAction.java:239)
at org.bioviz.protannot.menu.ProtAnnotMenuProvider.actionPerformed(ProtAnnotMenuProvider.java:58)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2750)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.awt.EventQueue$4.run(EventQueue.java:729)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at org.bioviz.protannot.model.ProtannotParser.checkTranslationLength(ProtannotParser.java:619)
at org.bioviz.protannot.model.ProtannotParser.parse(ProtannotParser.java:156)
at org.bioviz.protannot.ProtAnnotAction.load(ProtAnnotAction.java:717)
at org.bioviz.protannot.ProtAnnotAction.actionPerformed(ProtAnnotAction.java:239)
at org.bioviz.protannot.menu.ProtAnnotMenuProvider.actionPerformed(ProtAnnotMenuProvider.java:58)
at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346)
at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
at java.awt.Component.processMouseEvent(Component.java:6525)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6290)
at java.awt.Container.processEvent(Container.java:2234)
at java.awt.Component.dispatchEventImpl(Component.java:4881)
at java.awt.Container.dispatchEventImpl(Container.java:2292)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462)
at java.awt.Container.dispatchEventImpl(Container.java:2278)
at java.awt.Window.dispatchEventImpl(Window.java:2750)
at java.awt.Component.dispatchEvent(Component.java:4703)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86)
at java.awt.EventQueue$4.run(EventQueue.java:731)
at java.awt.EventQueue$4.run(EventQueue.java:729)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)

Attachments

Activity

Descending order - Click to sort in ascending order

Ann Loraine made changes - 16/Oct/19 5:49 PM

Workflow

Fall 2019 Workflow Update [ 19605 ]

Revised Fall 2019 Workflow Update [ 21724 ]

Ann Loraine made changes - 27/Aug/19 4:59 PM

Workflow

Loraine Lab Workflow [ 16265 ]

Fall 2019 Workflow Update [ 19605 ]

John Eckstein (Inactive) made changes - 02/Sep/15 12:40 PM

Resolution		Done [ 10000 ]
Status	Open [ 1 ]	Closed [ 6 ]

John Eckstein (Inactive) made changes - 02/Sep/15 12:40 PM

Labels

ProtAnnot

John Eckstein (Inactive) made changes - 02/Sep/15 12:40 PM

Resolution	Done [ 10000 ]
Status	Closed [ 6 ]	Open [ 1 ]

Tarun Mall (Inactive) made changes - 12/Aug/15 5:42 AM

Resolution		Done [ 10000 ]
Status	Needs Testing [ 10002 ]	Closed [ 6 ]

Hide

Permalink

Tarun Mall (Inactive) added a comment - 12/Aug/15 5:42 AM

To test this issue I selected a gene model and entrons of another gene model. I got no exceptions and a message that please select whole gene models.
This issue is resolved.

Show

Tarun Mall (Inactive) added a comment - 12/Aug/15 5:42 AM To test this issue I selected a gene model and entrons of another gene model. I got no exceptions and a message that please select whole gene models. This issue is resolved.

John Eckstein (Inactive) made changes - 11/Aug/15 12:01 PM

Assignee

David Norris [ dcnorris ]

Tarun Mall [ tmall ]

David Norris (Inactive) made changes - 11/Aug/15 9:22 AM

Story Points

0.25

David Norris (Inactive) made changes - 11/Aug/15 9:22 AM

Rank

Ranked lower

David Norris (Inactive) made changes - 11/Aug/15 8:45 AM

Rank

Ranked higher

David Norris (Inactive) made changes - 11/Aug/15 8:45 AM

Sprint

Sprint 25 [ 32 ]

David Norris (Inactive) made changes - 11/Aug/15 8:45 AM

Sprint

Sprint 24 [ 31 ]

David Norris (Inactive) made changes - 11/Aug/15 7:55 AM

Status

In Progress [ 3 ]

Needs Testing [ 10002 ]

David Norris (Inactive) made changes - 11/Aug/15 7:31 AM

Status

Open [ 1 ]

In Progress [ 3 ]

David Norris (Inactive) made changes - 07/Aug/15 7:30 AM

Status

In Progress [ 3 ]

Open [ 1 ]

David Norris (Inactive) made changes - 05/Aug/15 1:10 PM

Status

Open [ 1 ]

In Progress [ 3 ]

David Norris (Inactive) made changes - 05/Aug/15 11:17 AM

Field	Original Value	New Value
Sprint		Sprint 24 [ 31 ]

David Norris (Inactive) created issue - 05/Aug/15 11:17 AM

People

Assignee:

Tarun Mall (Inactive)

Reporter:

David Norris (Inactive)

Votes:

0 Vote for this issue

Watchers:

2 Start watching this issue

Dates

Created:

05/Aug/15 11:17 AM

Updated:

02/Sep/15 12:40 PM

Resolved:

02/Sep/15 12:40 PM